{ "type": "genome", "identifier": "GCF_025457425.1", "organism": "Chryseobacterium foetidum", "title": "Chryseobacterium foetidum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025457425.1", "bioproject": "PRJNA224116", "biosample": "SAMN29231588", "wgs_master": "JAMXIA000000000.1", "refseq_category": "reference genome", "taxid": "2951057", "species_taxid": "2951057", "organism_name": "Chryseobacterium foetidum", "infraspecific_name": "strain=CJ63", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/28", "asm_name": "ASM2545742v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_025457425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/457/425/GCF_025457425.1_ASM2545742v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3990314", "genome_size_ungapped": "3990314", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025457425.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "3675", "protein_coding_gene_count": "3566", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-28", "dateModified": "2022-09-28", "datePublished": "2022-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium foetidum" ], "sample_taxid": [ "2951057" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Han River" ], "sample_host_location_id": [], "data_size": "1.113 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3990314", "Number of Sequences": "2", "Longest Sequences (bp)": "3769954", "N50 (bp)": "3769954", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.6", "Number of CDSs": "3577", "Average Protein Length": "318.5", "Coding Ratio (%)": "85.7", "Number of rRNAs": "15", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium caseinilyticum", "strain": "strain=GCR10", "accession": "GCA_014837145.1", "taxid": 2771428, "species_taxid": 2771428, "relation_to_type": "type", "validated": true, "ani": 86.8598, "matched_fragments": 1065, "total_fragments": 1329, 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"below_threshold" }, { "organism_name": "Chryseobacterium indoltheticum", "strain": "strain=ATCC 27950", "accession": "GCA_003815915.1", "taxid": 254, "species_taxid": 254, "relation_to_type": "type", "validated": true, "ani": 81.06, "matched_fragments": 720, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium piscium", "strain": "strain=CCUG 51923", "accession": "GCA_003385415.1", "taxid": 333702, "species_taxid": 333702, "relation_to_type": "type", "validated": true, "ani": 80.9348, "matched_fragments": 696, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 80.7912, "matched_fragments": 690, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, "relation_to_type": "type", "validated": true, "ani": 80.7582, "matched_fragments": 733, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum", "strain": "strain=KCTC 12483", "accession": "GCA_001420285.1", "taxid": 452084, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 80.3354, "matched_fragments": 627, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum subsp. greenlandense", "strain": "strain=UMB34", "accession": "GCA_001507325.1", "taxid": 345663, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 80.1605, "matched_fragments": 643, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 79.8543, "matched_fragments": 647, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium limigenitum", "strain": "strain=SUR2", "accession": "GCA_900114875.1", "taxid": 1612149, "species_taxid": 1612149, "relation_to_type": "type", "validated": true, "ani": 79.6371, "matched_fragments": 575, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 79.6353, "matched_fragments": 515, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 79.4317, "matched_fragments": 589, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium geocarposphaerae", "strain": "strain=DSM 27617", "accession": "GCA_002797535.1", "taxid": 1416776, "species_taxid": 1416776, "relation_to_type": "type", "validated": true, "ani": 79.388, "matched_fragments": 546, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium daeguense", "strain": "strain=DSM 19388", "accession": "GCA_000430825.1", "taxid": 412438, "species_taxid": 412438, "relation_to_type": "type", "validated": true, "ani": 79.2972, "matched_fragments": 545, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 79.2661, "matched_fragments": 567, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium hispalense", "strain": "strain=DSM 25574", "accession": "GCA_000708615.2", "taxid": 1453492, "species_taxid": 1453492, "relation_to_type": "type", "validated": true, "ani": 79.2291, "matched_fragments": 499, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 79.0258, "matched_fragments": 523, "total_fragments": 1329, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cheonjiense", "strain": "strain=RJ-7-14", "accession": "GCA_012927265.1", "taxid": 2728845, 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