{ "type": "genome", "identifier": "GCF_025460835.1", "organism": "Parapedobacter soli", "title": "Parapedobacter soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China General Microbiological Culture Collection Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025460835.1", "bioproject": "PRJNA224116", "biosample": "SAMN29203649", "wgs_master": "JAMXAY000000000.1", "refseq_category": "reference genome", "taxid": "416955", "species_taxid": "416955", "organism_name": "Parapedobacter soli", "infraspecific_name": "strain=KCTC 12984", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/28", "asm_name": "ASM2546083v1", "asm_submitter": "China General Microbiological Culture Collection Center", "gbrs_paired_asm": "GCA_025460835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/460/835/GCF_025460835.1_ASM2546083v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5168858", "genome_size_ungapped": "5168432", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "177", "contig_count": "177", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025460835.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4442", "protein_coding_gene_count": "4357", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-28", "dateModified": "2022-09-28", "datePublished": "2022-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Parapedobacter soli" ], "sample_taxid": [ "416955" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.483 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5168858", "Number of Sequences": "177", "Longest Sequences (bp)": "304327", "N50 (bp)": "78804", "Gap Ratio (%)": "0.009306", "GCcontent (%)": "49.6", "Number of CDSs": "4269", "Average Protein Length": "358.1", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parapedobacter soli", "strain": "strain=KCTC 12984", "accession": "GCA_025460835.1", "taxid": 416955, "species_taxid": 416955, 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77.8395, "matched_fragments": 353, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parapedobacter composti", "strain": "strain=DSM 22900", "accession": "GCA_900112315.1", "taxid": 623281, "species_taxid": 623281, "relation_to_type": "type", "validated": true, "ani": 77.577, "matched_fragments": 203, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parapedobacter defluvii", "strain": "strain=CGMCC 1.15342", "accession": "GCA_014642075.1", "taxid": 2045106, "species_taxid": 2045106, "relation_to_type": "type", "validated": true, "ani": 77.5139, "matched_fragments": 282, "total_fragments": 1645, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parapedobacter koreensis", "strain": "strain=Jip14", "accession": "GCA_900109365.1", "taxid": 332977, "species_taxid": 332977, "relation_to_type": "type", "validated": true, "ani": 77.5001, "matched_fragments": 218, 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