{ "type": "genome", "identifier": "GCF_025562715.2", "organism": "Endozoicomonas gorgoniicola", "title": "Endozoicomonas gorgoniicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Academia sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025562715.2", "bioproject": "PRJNA224116", "biosample": "SAMN30403241", "wgs_master": "JAPFCC000000000.1", "refseq_category": "reference genome", "taxid": "1234144", "species_taxid": "1234144", "organism_name": "Endozoicomonas gorgoniicola", "infraspecific_name": "strain=PS125", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/12", "asm_name": "ASM2556271v2", "asm_submitter": "Academia sinica", "gbrs_paired_asm": "GCA_025562715.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/562/715/GCF_025562715.2_ASM2556271v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6338248", "genome_size_ungapped": "6338248", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025562715.2-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5774", "protein_coding_gene_count": "5524", "non_coding_gene_count": "132", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-12", "dateModified": "2022-11-12", "datePublished": "2022-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Endozoicomonas gorgoniicola" ], "sample_taxid": [ "1234144" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Bahamas: Bimini" ], "sample_host_location_id": [], "data_size": "1.773 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6338248", "Number of Sequences": "2", "Longest Sequences (bp)": "6284089", "N50 (bp)": "6284089", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.2", "Number of CDSs": "5579", "Average Protein Length": "318.0", "Coding Ratio (%)": "84.0", "Number of rRNAs": "25", "Number of tRNAs": "99", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Endozoicomonas montiporae", "strain": "strain=CL-33", "accession": "GCA_001583435.1", "taxid": 1027273, "species_taxid": 1027273, "relation_to_type": "type", "validated": true, "ani": 81.6732, "matched_fragments": 902, "total_fragments": 2112, "ani_threshold": 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"organism_name": "Endozoicomonas arenosclerae", "strain": "strain=ab112", "accession": "GCA_001562015.1", "taxid": 1633495, "species_taxid": 1633495, "relation_to_type": "type", "validated": true, "ani": 78.4426, "matched_fragments": 275, "total_fragments": 2112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Endozoicomonas ascidiicola", "strain": "strain=AVMART05", "accession": "GCA_001646945.1", "taxid": 1698521, "species_taxid": 1698521, "relation_to_type": "type", "validated": true, "ani": 77.747, "matched_fragments": 212, "total_fragments": 2112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Endozoicomonas acroporae", "strain": "strain=Acr-14", "accession": "GCA_002864045.1", "taxid": 1701104, "species_taxid": 1701104, "relation_to_type": "type", "validated": true, "ani": 77.6969, "matched_fragments": 195, "total_fragments": 2112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Endozoicomonas atrinae", "strain": "strain=WP70", "accession": "GCA_001647025.2", "taxid": 1333660, "species_taxid": 1333660, "relation_to_type": "type", "validated": true, "ani": 77.6594, "matched_fragments": 188, "total_fragments": 2112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 76.3329, "matched_fragments": 59, "total_fragments": 2112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3282, "matched_fragments": 51, "total_fragments": 2112, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 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"GCA_017744115.1", "gtdb_species": "s__Endozoicomonas sp017744115", "ani": 77.4304, "matched_fragments": 203, "total_fragments": 2112, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Endozoicomonadaceae;g__Endozoicomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900108065.1", "gtdb_species": "s__Marinobacterium lutimaris", "ani": 76.3214, "matched_fragments": 58, "total_fragments": 2112, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { 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