{
    "type": "genome",
    "identifier": "GCF_025567045.1",
    "organism": "Barnesiella propionica",
    "title": "Barnesiella propionica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UniKlinik RWTH Aachen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025567045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30962676",
        "wgs_master": "JAOQJK000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2981781",
        "species_taxid": "2981781",
        "organism_name": "Barnesiella propionica",
        "infraspecific_name": "strain=E21",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/04",
        "asm_name": "ASM2556704v1",
        "asm_submitter": "UniKlinik RWTH Aachen",
        "gbrs_paired_asm": "GCA_025567045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/567/045/GCF_025567045.1_ASM2556704v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3354558",
        "genome_size_ungapped": "3354558",
        "gc_percent": "40.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025567045.1-RS_2024_10_25",
        "annotation_date": "2024-10-25",
        "total_gene_count": "2909",
        "protein_coding_gene_count": "2802",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-04",
    "dateModified": "2022-10-04",
    "datePublished": "2022-10-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Barnesiella propionica"
        ],
        "sample_taxid": [
            "2981781"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.951 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3354558",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "556069",
        "N50 (bp)": "347153",
        "Gap Ratio (%)": "0.000030",
        "GCcontent (%)": "40.3",
        "Number of CDSs": "2773",
        "Average Protein Length": "353.5",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacteroides faecalis",
                "strain": "strain=KCTC 15687",
                "accession": "GCA_003865075.1",
                "taxid": 2447885,
                "species_taxid": 2447885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7338,
                "matched_fragments": 76,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides salyersiae",
                "strain": "strain=DSM 18765",
                "accession": "GCA_000381365.1",
                "taxid": 291644,
                "species_taxid": 291644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4249,
                "matched_fragments": 72,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacter secundus subsp. similis",
                "strain": "strain=2CBH44",
                "accession": "GCA_015097275.1",
                "taxid": 2751153,
                "species_taxid": 1501392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8938,
                "matched_fragments": 100,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Barnesiella intestinihominis",
                "strain": "strain=YIT 11860",
                "accession": "GCA_000296465.1",
                "taxid": 487174,
                "species_taxid": 487174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8821,
                "matched_fragments": 98,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fragilis",
                "strain": "strain=FDAARGOS_1512",
                "accession": "GCA_020097275.1",
                "taxid": 817,
                "species_taxid": 817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.603,
                "matched_fragments": 62,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fragilis",
                "strain": "strain=NCTC 9343",
                "accession": "GCA_900445515.1",
                "taxid": 817,
                "species_taxid": 817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5369,
                "matched_fragments": 64,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides fragilis",
                "strain": "strain=ATCC 25285",
                "accession": "GCA_001997325.1",
                "taxid": 817,
                "species_taxid": 817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3541,
                "matched_fragments": 62,
                "total_fragments": 1105,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902363425.1",
                "gtdb_species": "s__CABJAA01 sp003150885",
                "ani": 100.0,
                "matched_fragments": 1105,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__CABJAA01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902362595.1",
                "gtdb_species": "s__Phocaeicola merdigallinarum",
                "ani": 85.2821,
                "matched_fragments": 67,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "96.40",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003865075.1",
                "gtdb_species": "s__Bacteroides faecalis",
                "ani": 80.7671,
                "matched_fragments": 76,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000803105.1",
                "gtdb_species": "s__Coprobacter secundus",
                "ani": 78.4245,
                "matched_fragments": 100,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Coprobacteraceae;g__Coprobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "96.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900538555.1",
                "gtdb_species": "s__UMGS27 sp900538555",
                "ani": 78.0889,
                "matched_fragments": 90,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__UMGS27",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.62",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000296465.1",
                "gtdb_species": "s__Barnesiella intestinihominis",
                "ani": 77.8633,
                "matched_fragments": 98,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Barnesiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 27,
                "status": "-"
            },
            {
                "accession": "GCA_000613465.1",
                "gtdb_species": "s__Bacteroides nordii",
                "ani": 77.6917,
                "matched_fragments": 50,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_900545915.1",
                "gtdb_species": "s__Coprobacter sp900545915",
                "ani": 76.9951,
                "matched_fragments": 83,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Coprobacteraceae;g__Coprobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.49",
                "min_intra_species_ani": "96.20",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019115485.1",
                "gtdb_species": "s__Barnesiella excrementavium",
                "ani": 76.9486,
                "matched_fragments": 61,
                "total_fragments": 1105,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Barnesiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": 0.458,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 34.75,
        "optimum_ph": 7.0,
        "genome_size": 3255281.5,
        "gc_content": 47.805,
        "coding_genes": 2473.667,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 62.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Barnesiella",
        "propionica"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}