{
    "type": "genome",
    "identifier": "GCF_025567285.1",
    "organism": "Coprococcus aceti",
    "title": "Coprococcus aceti",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UniKlinik RWTH Aachen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025567285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30962685",
        "wgs_master": "JAOQJT000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2981786",
        "species_taxid": "2981786",
        "organism_name": "Coprococcus aceti",
        "infraspecific_name": "strain=H2_11",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/04",
        "asm_name": "ASM2556728v1",
        "asm_submitter": "UniKlinik RWTH Aachen",
        "gbrs_paired_asm": "GCA_025567285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/567/285/GCF_025567285.1_ASM2556728v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3235561",
        "genome_size_ungapped": "3233932",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "24",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-29",
        "total_gene_count": "2921",
        "protein_coding_gene_count": "2823",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-04",
    "dateModified": "2022-10-04",
    "datePublished": "2022-10-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Coprococcus aceti"
        ],
        "sample_taxid": [
            "2981786"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.915 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3235561",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "565158",
        "N50 (bp)": "250108",
        "Gap Ratio (%)": "0.050470",
        "GCcontent (%)": "43.7",
        "Number of CDSs": "2873",
        "Average Protein Length": "333.3",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_025149915.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.1468,
                "matched_fragments": 725,
                "total_fragments": 1067,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_000154425.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.9787,
                "matched_fragments": 740,
                "total_fragments": 1067,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hominisplanchenecus faecis",
                "strain": "strain=CLA-AA-H246",
                "accession": "GCA_020687205.1",
                "taxid": 2885351,
                "species_taxid": 2885351,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4999,
                "matched_fragments": 52,
                "total_fragments": 1067,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ramulus",
                "strain": "strain=ATCC 29099",
                "accession": "GCA_000469345.1",
                "taxid": 39490,
                "species_taxid": 39490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6637,
                "matched_fragments": 62,
                "total_fragments": 1067,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Wujia chipingensis",
                "strain": "strain=NSJ-4",
                "accession": "GCA_014337155.1",
                "taxid": 2763670,
                "species_taxid": 2763670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3259,
                "matched_fragments": 103,
                "total_fragments": 1067,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ruminantium",
                "strain": "strain=ATCC 17233",
                "accession": "GCA_900167085.1",
                "taxid": 42322,
                "species_taxid": 42322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4877,
                "matched_fragments": 56,
                "total_fragments": 1067,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001404675.1",
                "gtdb_species": "s__Coprococcus eutactus_A",
                "ani": 98.6405,
                "matched_fragments": 915,
                "total_fragments": 1067,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.53",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 34,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000154425.1",
                "gtdb_species": "s__Coprococcus eutactus",
                "ani": 88.9787,
                "matched_fragments": 740,
                "total_fragments": 1067,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.02",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900557435.1",
                "gtdb_species": "s__Coprococcus sp900557435",
                "ani": 88.3579,
                "matched_fragments": 456,
                "total_fragments": 1067,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900548215.1",
                "gtdb_species": "s__Coprococcus sp900548215",
                "ani": 87.7808,
                "matched_fragments": 576,
                "total_fragments": 1067,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.00",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900548315.1",
                "gtdb_species": "s__Coprococcus sp900548315",
                "ani": 87.6246,
                "matched_fragments": 490,
                "total_fragments": 1067,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900767685.1",
                "gtdb_species": "s__Coprococcus sp900767685",
                "ani": 87.3356,
                "matched_fragments": 538,
                "total_fragments": 1067,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016297325.1",
                "gtdb_species": "s__Coprococcus sp016297325",
                "ani": 85.3531,
                "matched_fragments": 554,
                "total_fragments": 1067,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017624085.1",
                "gtdb_species": "s__Coprococcus sp017624085",
                "ani": 79.5239,
                "matched_fragments": 120,
                "total_fragments": 1067,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.117,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 5.775,
        "genome_size": 3287902.0,
        "gc_content": 42.676,
        "coding_genes": 2985.0,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Coprococcus",
        "aceti"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}