{ "type": "genome", "identifier": "GCF_025567385.1", "organism": "Dorea acetigenes", "title": "Dorea acetigenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UniKlinik RWTH Aachen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025567385.1", "bioproject": "PRJNA224116", "biosample": "SAMN30962686", "wgs_master": "JAOQJU000000000.1", "refseq_category": "reference genome", "taxid": "2981787", "species_taxid": "2981787", "organism_name": "Dorea acetigenes", "infraspecific_name": "strain=Sanger_03", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/04", "asm_name": "ASM2556738v1", "asm_submitter": "UniKlinik RWTH Aachen", "gbrs_paired_asm": "GCA_025567385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/567/385/GCF_025567385.1_ASM2556738v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3714607", "genome_size_ungapped": "3710132", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-29", "total_gene_count": "3595", "protein_coding_gene_count": "3429", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-04", "dateModified": "2022-10-04", "datePublished": "2022-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Dorea acetigenes" ], "sample_taxid": [ "2981787" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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{ "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1363, "matched_fragments": 129, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luxibacter massiliensis", "strain": "strain=Marseille-P5551", "accession": "GCA_900604355.1", "taxid": 2219695, "species_taxid": 2219695, "relation_to_type": "type", "validated": true, "ani": 79.7445, "matched_fragments": 123, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 79.5567, "matched_fragments": 140, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea 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35704", "accession": "GCA_004295125.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6187, "matched_fragments": 152, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_000155205.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 78.6114, "matched_fragments": 128, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_000154505.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5496, "matched_fragments": 150, "total_fragments": 1209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea longicatena", "strain": "strain=DSM 13814", "accession": "GCA_025150085.1", 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