{ "type": "genome", "identifier": "GCF_025567495.1", "organism": "Hominimerdicola aceti", "title": "Hominimerdicola aceti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UniKlinik RWTH Aachen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025567495.1", "bioproject": "PRJNA224116", "biosample": "SAMN30962691", "wgs_master": "JAOQJZ000000000.1", "refseq_category": "reference genome", "taxid": "2981726", "species_taxid": "2981726", "organism_name": "Hominimerdicola aceti", "infraspecific_name": "strain=Sanger_31", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/04", "asm_name": "ASM2556749v1", "asm_submitter": "UniKlinik RWTH Aachen", "gbrs_paired_asm": "GCA_025567495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/567/495/GCF_025567495.1_ASM2556749v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2965035", "genome_size_ungapped": "2963841", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025567495.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "2870", "protein_coding_gene_count": "2782", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-04", "dateModified": "2022-10-04", "datePublished": "2022-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Hominimerdicola aceti" ], "sample_taxid": [ "2981726" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.837 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2965035", "Number of Sequences": "34", "Longest Sequences (bp)": "447747", "N50 (bp)": "163472", "Gap Ratio (%)": "0.040371", "GCcontent (%)": "42.3", "Number of CDSs": "2831", "Average Protein Length": "304.0", "Coding Ratio (%)": "87.1", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruminococcus bicirculans", "strain": "strain=80/3", "accession": "GCA_000723465.1", "taxid": 1160721, "species_taxid": 1160721, "relation_to_type": "type", "validated": true, "ani": 97.4653, "matched_fragments": 825, "total_fragments": 972, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ruminococcus albus", "strain": "strain=7", "accession": "GCA_000179635.2", "taxid": 1264, "species_taxid": 1264, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0616, "matched_fragments": 147, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus albus", "strain": "strain=DSM 20455", "accession": "GCA_000621285.1", "taxid": 1264, "species_taxid": 1264, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7573, "matched_fragments": 144, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000723465.1", "gtdb_species": "s__Ruminococcus_D bicirculans", "ani": 97.4653, "matched_fragments": 825, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 66, "status": "conclusive" }, { "accession": "GCA_900539095.1", "gtdb_species": "s__Ruminococcus_D sp900539095", "ani": 89.6373, "matched_fragments": 590, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900318545.1", "gtdb_species": "s__Ruminococcus_D sp900318545", "ani": 78.0919, "matched_fragments": 139, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.77", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000621805.1", "gtdb_species": "s__Ruminococcus_D sp000621805", "ani": 78.0879, "matched_fragments": 143, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000179635.2", "gtdb_species": "s__Ruminococcus_D albus", "ani": 78.0717, "matched_fragments": 146, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900112155.1", "gtdb_species": "s__Ruminococcus_D albus_D", "ani": 78.0187, "matched_fragments": 148, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900319075.1", "gtdb_species": "s__Ruminococcus_D sp900319075", "ani": 77.9963, "matched_fragments": 120, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCA_017626015.1", "gtdb_species": "s__Ruminococcus_D sp017626015", "ani": 77.9804, "matched_fragments": 161, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902800795.1", "gtdb_species": "s__Ruminococcus_D sp902800795", "ani": 77.9733, "matched_fragments": 155, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.42", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017484095.1", "gtdb_species": "s__Ruminococcus_D sp017484095", "ani": 77.9453, "matched_fragments": 152, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900314975.1", "gtdb_species": "s__Ruminococcus_D sp900314975", "ani": 77.9088, "matched_fragments": 142, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000526775.1", "gtdb_species": "s__Ruminococcus_D albus_A", "ani": 77.9015, "matched_fragments": 149, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "97.22", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_902762735.1", "gtdb_species": "s__Ruminococcus_D sp902762735", "ani": 77.7454, "matched_fragments": 132, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002391065.1", "gtdb_species": "s__Ruminococcus_D sp002391065", "ani": 77.6668, "matched_fragments": 149, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109655.1", "gtdb_species": "s__Ruminococcus_D albus_B", "ani": 77.5063, "matched_fragments": 139, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902767035.1", "gtdb_species": "s__Ruminococcus_D sp902767035", "ani": 77.2402, "matched_fragments": 126, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002368715.1", "gtdb_species": "s__Ruminococcus_D sp002368715", "ani": 76.878, "matched_fragments": 103, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Hominimerdicola", "aceti" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }