{
    "type": "genome",
    "identifier": "GCF_025595115.1",
    "organism": "Turicibacter sanguinis",
    "title": "Turicibacter sanguinis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Los Angeles",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025595115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN28887163",
        "wgs_master": "JAMQVA000000000.1",
        "refseq_category": "na",
        "taxid": "154288",
        "species_taxid": "154288",
        "organism_name": "Turicibacter sanguinis",
        "infraspecific_name": "strain=MOL361",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/05",
        "asm_name": "ASM2559511v1",
        "asm_submitter": "University of California, Los Angeles",
        "gbrs_paired_asm": "GCA_025595115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/595/115/GCF_025595115.1_ASM2559511v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2909971",
        "genome_size_ungapped": "2909737",
        "gc_percent": "34.000000",
        "replicon_count": "0",
        "scaffold_count": "72",
        "contig_count": "72",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025595115.1-RS_2024_10_26",
        "annotation_date": "2024-10-26",
        "total_gene_count": "2801",
        "protein_coding_gene_count": "2707",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-05",
    "dateModified": "2022-10-05",
    "datePublished": "2022-10-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Turicibacter sanguinis"
        ],
        "sample_taxid": [
            "154288"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.818 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2909971",
        "Number of Sequences": "72",
        "Longest Sequences (bp)": "234485",
        "N50 (bp)": "109433",
        "Gap Ratio (%)": "0.008282",
        "GCcontent (%)": "34.2",
        "Number of CDSs": "2743",
        "Average Protein Length": "300.4",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Turicibacter sanguinis",
                "strain": "strain=MOL361",
                "accession": "GCA_013046825.1",
                "taxid": 154288,
                "species_taxid": 154288,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.993,
                "matched_fragments": 937,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Turicibacter bilis",
                "strain": "strain=MMM721",
                "accession": "GCA_024499055.1",
                "taxid": 2735723,
                "species_taxid": 2735723,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8523,
                "matched_fragments": 413,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Turicibacter bilis",
                "strain": "strain=MMM721",
                "accession": "GCA_018305205.1",
                "taxid": 2735723,
                "species_taxid": 2735723,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8071,
                "matched_fragments": 406,
                "total_fragments": 938,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013046825.1",
                "gtdb_species": "s__Turicibacter sanguinis",
                "ani": 99.993,
                "matched_fragments": 937,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 18,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001543345.1",
                "gtdb_species": "s__Turicibacter sp001543345",
                "ani": 80.773,
                "matched_fragments": 398,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_017888305.1",
                "gtdb_species": "s__Turicibacter sp017888305",
                "ani": 80.7017,
                "matched_fragments": 276,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009935875.1",
                "gtdb_species": "s__Turicibacter sp002311155",
                "ani": 79.4284,
                "matched_fragments": 251,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002493395.1",
                "gtdb_species": "s__Turicibacter sp002493395",
                "ani": 78.959,
                "matched_fragments": 223,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003486705.1",
                "gtdb_species": "s__Turicibacter sp003486705",
                "ani": 78.6827,
                "matched_fragments": 187,
                "total_fragments": 938,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.5,
        "genome_size": 2953411.0,
        "gc_content": 34.1,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Turicibacter",
        "sanguinis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}