{ "type": "genome", "identifier": "GCF_025660475.1", "organism": "Perspicuibacillus lycopersici", "title": "Perspicuibacillus lycopersici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Institute of Ocean Science & Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025660475.1", "bioproject": "PRJNA224116", "biosample": "SAMN31171762", "wgs_master": "JAOUSF000000000.1", "refseq_category": "reference genome", "taxid": "1325689", "species_taxid": "1325689", "organism_name": "Perspicuibacillus lycopersici", "infraspecific_name": "strain=JCM 19140", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/11", "asm_name": "ASM2566047v1", "asm_submitter": "Korea Institute of Ocean Science & Technology", "gbrs_paired_asm": "GCA_025660475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/660/475/GCF_025660475.1_ASM2566047v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3638728", "genome_size_ungapped": "3638628", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025660475.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3557", "protein_coding_gene_count": "3421", "non_coding_gene_count": "99", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-11", "dateModified": "2022-10-11", "datePublished": "2022-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Perspicuibacillus lycopersici" ], "sample_taxid": [ "1325689" ], "sample_host_organism": [ "tomato plant" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Taichung" ], "sample_host_location_id": [], "data_size": "1.021 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 30.0, "max": 30.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3638728", "Number of Sequences": "12", "Longest Sequences (bp)": "892814", "N50 (bp)": "800140", "Gap Ratio (%)": "0.002748", "GCcontent (%)": "35.9", "Number of CDSs": "3464", "Average Protein Length": "290.4", "Coding Ratio (%)": "82.9", "Number of rRNAs": "4", "Number of tRNAs": "74", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus andreraoultii", "strain": "strain=SIT1", "accession": "GCA_001244735.1", "taxid": 1499685, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 76.7558, "matched_fragments": 115, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caldibacillus pasinlerensis", "strain": "strain=P1", "accession": "GCA_009996845.1", "taxid": 2703818, "species_taxid": 2703818, "relation_to_type": "type", "validated": true, "ani": 76.7135, "matched_fragments": 131, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus depressus", "strain": "strain=BZ1", "accession": "GCA_008923245.1", "taxid": 1602942, "species_taxid": 1602942, "relation_to_type": "type", "validated": true, "ani": 76.6927, "matched_fragments": 71, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus salipaludis", "strain": "strain=WN066", "accession": "GCA_004358205.1", "taxid": 2547811, "species_taxid": 2547811, "relation_to_type": "type", "validated": true, "ani": 76.6912, "matched_fragments": 76, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus aquiflavi", "strain": "strain=3H-10", "accession": "GCA_011008855.1", "taxid": 2672567, "species_taxid": 2672567, "relation_to_type": "type", "validated": true, "ani": 76.6075, "matched_fragments": 67, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 76.5981, "matched_fragments": 93, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 76.594, "matched_fragments": 71, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus massiliogorillae", "strain": "strain=G2", "accession": "GCA_000380245.2", "taxid": 1243664, "species_taxid": 1243664, "relation_to_type": "type", "validated": true, "ani": 76.5771, "matched_fragments": 75, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus sanguinis", "strain": "strain=BML-BC004", "accession": "GCA_018332475.1", "taxid": 2817476, "species_taxid": 2817476, "relation_to_type": "type", "validated": true, "ani": 76.472, "matched_fragments": 57, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus gaemokensis", "strain": "strain=KCTC 13318", "accession": "GCA_001590835.1", "taxid": 574375, 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