{ "type": "genome", "identifier": "GCF_025669985.1", "organism": "Brachybacterium atlanticum", "title": "Brachybacterium atlanticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidade de Acores", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025669985.1", "bioproject": "PRJNA224116", "biosample": "SAMN25159311", "wgs_master": "JAKJJW000000000.1", "refseq_category": "reference genome", "taxid": "2911888", "species_taxid": "2911888", "organism_name": "Brachybacterium atlanticum", "infraspecific_name": "strain=PhyBa_CO2_2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/12", "asm_name": "ASM2566998v1", "asm_submitter": "Universidade de Acores", "gbrs_paired_asm": "GCA_025669985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/669/985/GCF_025669985.1_ASM2566998v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3642166", "genome_size_ungapped": "3642166", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025669985.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3332", "protein_coding_gene_count": "3223", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-12", "dateModified": "2022-10-12", "datePublished": "2022-10-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Brachybacterium atlanticum" ], "sample_taxid": [ "2911888" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal: Terceira Island, Azores" ], "sample_host_location_id": [], "data_size": "0.971 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3642166", "Number of Sequences": "85", "Longest Sequences (bp)": "250809", "N50 (bp)": "90408", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "3266", "Average Protein Length": "328.1", "Coding Ratio (%)": "88.3", "Number of rRNAs": "1", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brachybacterium aquaticum", "strain": "strain=DSM 28796", "accession": "GCA_014204755.1", "taxid": 1432564, "species_taxid": 1432564, "relation_to_type": "type", "validated": true, "ani": 86.5806, 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1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium massiliense", "strain": "strain=mt5", "accession": "GCA_900184245.1", "taxid": 1755098, "species_taxid": 1755098, "relation_to_type": "type", "validated": true, "ani": 84.8019, "matched_fragments": 826, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium ginsengisoli", "strain": "strain=DCY80", "accession": "GCA_002407065.1", "taxid": 1331682, "species_taxid": 1331682, "relation_to_type": "type", "validated": true, "ani": 84.5636, "matched_fragments": 831, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium vulturis", "strain": "strain=VM2412", "accession": "GCA_002407185.1", "taxid": 2017484, "species_taxid": 2017484, "relation_to_type": "type", "validated": true, "ani": 83.8303, "matched_fragments": 799, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium fresconis", "strain": "strain=DSM 14564", "accession": "GCA_017876515.1", "taxid": 173363, "species_taxid": 173363, "relation_to_type": "type", "validated": true, "ani": 83.3061, "matched_fragments": 814, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium sacelli", "strain": "strain=DSM 14566", "accession": "GCA_017876545.1", "taxid": 173364, "species_taxid": 173364, "relation_to_type": "type", "validated": true, "ani": 82.8968, "matched_fragments": 828, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium epidermidis", "strain": "strain=Marseille-Q2903", "accession": "GCA_015209585.1", "taxid": 2781983, "species_taxid": 2781983, "relation_to_type": "type", "validated": true, "ani": 82.2847, "matched_fragments": 638, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium halotolerans subsp. kimchii", "strain": "strain=CBA3105", "accession": "GCA_020792675.1", "taxid": 2887346, "species_taxid": 2795215, "relation_to_type": "type", "validated": true, "ani": 81.1309, "matched_fragments": 677, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium kimchii", "strain": "strain=CBA3104", "accession": "GCA_023373525.1", "taxid": 2942909, "species_taxid": 2942909, "relation_to_type": "type", "validated": true, "ani": 81.0477, "matched_fragments": 659, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanitalea stevensii", "strain": "strain=Sa1BUA1", "accession": "GCA_014837105.1", "taxid": 2763072, "species_taxid": 2763072, "relation_to_type": "type", "validated": true, "ani": 77.4084, "matched_fragments": 352, "total_fragments": 1171, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia 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88.7881, "matched_fragments": 924, "total_fragments": 1171, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermabacteraceae;g__Brachybacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014204755.1", "gtdb_species": "s__Brachybacterium aquaticum", "ani": 86.5862, "matched_fragments": 857, "total_fragments": 1171, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermabacteraceae;g__Brachybacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003355475.1", "gtdb_species": "s__Brachybacterium saurashtrense", "ani": 85.397, 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