{
    "type": "genome",
    "identifier": "GCF_025685705.1",
    "organism": "Edaphobacter dinghuensis",
    "title": "Edaphobacter dinghuensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sun Yat-sen University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025685705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18744427",
        "wgs_master": "JAGSYJ000000000.1",
        "refseq_category": "na",
        "taxid": "1560005",
        "species_taxid": "1560005",
        "organism_name": "Edaphobacter dinghuensis",
        "infraspecific_name": "strain=DHF9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/13",
        "asm_name": "ASM2568570v1",
        "asm_submitter": "Sun Yat-sen University",
        "gbrs_paired_asm": "GCA_025685705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/685/705/GCF_025685705.1_ASM2568570v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4536130",
        "genome_size_ungapped": "4536130",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025685705.1-RS_2024_11_06",
        "annotation_date": "2024-11-06",
        "total_gene_count": "3720",
        "protein_coding_gene_count": "3656",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-13",
    "dateModified": "2022-10-13",
    "datePublished": "2022-10-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Edaphobacter dinghuensis"
        ],
        "sample_taxid": [
            "1560005"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guangdong Province"
        ],
        "sample_host_location_id": [],
        "data_size": "1.288 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4536130",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "1444653",
        "N50 (bp)": "1438063",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.9",
        "Number of CDSs": "3718",
        "Average Protein Length": "356.9",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "species_taxid": 2051959,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter flagellatus",
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                "species_taxid": 1933044,
                "relation_to_type": "type",
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                "ani": 78.3829,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter acidisoli",
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                "accession": "GCA_014642855.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter modestus",
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                "accession": "GCA_004217555.1",
                "taxid": 388466,
                "species_taxid": 388466,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Granulicella mallensis",
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                "accession": "GCA_000178955.2",
                "taxid": 940614,
                "species_taxid": 940614,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella rosea",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Granulicella sibirica",
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                "taxid": 2479048,
                "species_taxid": 2479048,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella pectinivorans",
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                "accession": "GCA_900114625.1",
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                "species_taxid": 474950,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bryocella elongata",
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                "accession": "GCA_900108185.1",
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                "species_taxid": 863522,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella tundricola",
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                "accession": "GCA_000178975.2",
                "taxid": 940615,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 77.653,
                "matched_fragments": 260,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "mean_intra_species_ani": "N/A",
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    },
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}