{ "type": "genome", "identifier": "GCF_025706525.1", "organism": "Pseudomonas mercuritolerans", "title": "Pseudomonas mercuritolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fundacion Universitaria San Pablo CEU", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025706525.1", "bioproject": "PRJNA224116", "biosample": "SAMN28920853", "wgs_master": "JAMSHA000000000.1", "refseq_category": "reference genome", "taxid": "2951809", "species_taxid": "2951809", "organism_name": "Pseudomonas mercuritolerans", "infraspecific_name": "strain=SAICEUPSM", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/14", "asm_name": "ASM2570652v1", "asm_submitter": "Fundacion Universitaria San Pablo CEU", "gbrs_paired_asm": "GCA_025706525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/706/525/GCF_025706525.1_ASM2570652v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6247344", "genome_size_ungapped": "6247344", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025706525.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5600", "protein_coding_gene_count": "5436", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-14", "dateModified": "2022-10-14", "datePublished": "2022-10-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas mercuritolerans" ], "sample_taxid": [ "2951809" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Ciudad Real" ], "sample_host_location_id": [], "data_size": "1.744 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6247344", "Number of Sequences": "54", "Longest Sequences (bp)": "1020000", "N50 (bp)": "585314", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "5518", "Average Protein Length": "329.5", "Coding Ratio (%)": "87.3", "Number of rRNAs": "8", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas atacamensis", "strain": "strain=M7D1", "accession": "GCA_004801935.1", "taxid": 2565368, "species_taxid": 2565368, 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"total_fragments": 2065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monsensis", "strain": "strain=PGSB 8459", "accession": "GCA_014268495.2", "taxid": 2745509, "species_taxid": 2745509, "relation_to_type": "type", "validated": true, "ani": 88.0707, "matched_fragments": 1596, "total_fragments": 2065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 87.6045, "matched_fragments": 1604, "total_fragments": 2065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 87.4754, "matched_fragments": 1567, "total_fragments": 2065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas rhizophila", "strain": "strain=S211", "accession": "GCA_003033885.1", "taxid": 2045200, "species_taxid": 2045200, "relation_to_type": "type", "validated": true, "ani": 83.5587, "matched_fragments": 1253, "total_fragments": 2065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicae", "strain": "strain=MAFF 212427", "accession": "GCA_010671725.1", "taxid": 2708063, "species_taxid": 2708063, "relation_to_type": "type", "validated": true, "ani": 81.9182, "matched_fragments": 856, "total_fragments": 2065, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004801935.1", "gtdb_species": "s__Pseudomonas_E atacamensis", "ani": 95.7322, "matched_fragments": 1809, "total_fragments": 2065, "gtdb_taxonomy": 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