{ "tc_result": [ { "organism_name": "Mycolicibacterium insubricum", "strain": "strain=JCM 16366", "accession": "GCA_010731615.1", "taxid": 444597, "species_taxid": 444597, "relation_to_type": "type", "validated": true, "ani": 99.8743, "matched_fragments": 1192, "total_fragments": 1203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=DSM 44179", "accession": "GCA_002101995.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 84.1649, "matched_fragments": 799, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 84.1339, "matched_fragments": 823, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium brumae", "strain": "strain=DSM 44177", "accession": "GCA_004014795.1", "taxid": 85968, "species_taxid": 85968, "relation_to_type": "type", "validated": true, "ani": 82.7867, "matched_fragments": 650, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium brumae", "strain": "strain=ATCC 51384", "accession": "GCA_025215495.1", "taxid": 85968, "species_taxid": 85968, "relation_to_type": "type", "validated": true, "ani": 82.6972, "matched_fragments": 664, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chitae", "strain": "strain=NCTC10485", "accession": "GCA_900637205.1", "taxid": 1792, "species_taxid": 1792, "relation_to_type": "type", "validated": true, "ani": 81.2217, "matched_fragments": 678, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chitae", "strain": "strain=JCM 12403", "accession": "GCA_010727725.1", "taxid": 1792, "species_taxid": 1792, "relation_to_type": "type", "validated": true, "ani": 81.1288, "matched_fragments": 691, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 79.7583, "matched_fragments": 590, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 79.7042, "matched_fragments": 601, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010731615.1", "gtdb_species": "s__Mycobacterium insubricum", "ani": 99.8743, "matched_fragments": 1192, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_010726955.1", "gtdb_species": "s__Mycobacterium fallax", "ani": 84.1165, "matched_fragments": 824, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004014795.1", "gtdb_species": "s__Mycobacterium brumae", "ani": 82.8384, "matched_fragments": 646, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900637205.1", "gtdb_species": "s__Mycobacterium chitae", "ani": 81.2237, "matched_fragments": 677, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001668625.1", "gtdb_species": "s__Mycobacterium sp001668625", "ani": 80.6445, "matched_fragments": 533, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018455725.1", "gtdb_species": "s__Mycobacterium sp018455725", "ani": 80.3704, "matched_fragments": 530, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019050325.1", "gtdb_species": "s__Mycobacterium fortunisiensis", "ani": 80.2867, "matched_fragments": 641, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001667265.1", "gtdb_species": "s__Mycobacterium sp001667265", "ani": 80.1743, "matched_fragments": 620, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001722335.1", "gtdb_species": "s__Mycobacterium flavescens_A", "ani": 80.1441, "matched_fragments": 605, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002723835.1", "gtdb_species": "s__Mycobacterium sp002723835", "ani": 79.9885, "matched_fragments": 607, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000317305.3", "gtdb_species": "s__Mycobacterium neoaurum_A", "ani": 79.8352, "matched_fragments": 517, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001665535.1", "gtdb_species": "s__Mycobacterium sp001665535", "ani": 79.8122, "matched_fragments": 511, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010730955.1", "gtdb_species": "s__Mycobacterium aubagnense", "ani": 79.7628, "matched_fragments": 568, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010727475.1", "gtdb_species": "s__Mycobacterium mageritense", "ani": 79.6982, "matched_fragments": 603, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001570425.1", "gtdb_species": "s__Mycobacterium brisbanense", "ani": 79.6853, "matched_fragments": 596, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }