{ "tc_result": [ { "organism_name": "Mycolicibacterium gadium", "strain": "strain=JCM 12688", "accession": "GCA_010728925.1", "taxid": 1794, "species_taxid": 1794, "relation_to_type": "type", "validated": true, "ani": 99.993, "matched_fragments": 1932, "total_fragments": 1941, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium tusciae", "strain": "strain=DSM 44338", "accession": "GCA_002086795.1", "taxid": 75922, "species_taxid": 75922, "relation_to_type": "type", "validated": true, "ani": 94.5553, "matched_fragments": 1649, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=JCM 6375", "accession": "GCA_010726085.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 83.4421, "matched_fragments": 1407, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=CIP105393", "accession": "GCA_002086395.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 83.4301, "matched_fragments": 1407, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 81.5964, "matched_fragments": 1144, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lehmannii", "strain": "strain=CECT 8763", "accession": "GCA_002245535.1", "taxid": 2048550, "species_taxid": 2048550, "relation_to_type": "type", "validated": true, "ani": 80.8796, "matched_fragments": 1067, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium malmesburyense", "strain": "strain=WCM 7299", "accession": "GCA_001050015.1", "taxid": 1566886, "species_taxid": 1566886, "relation_to_type": "type", "validated": true, "ani": 80.8445, "matched_fragments": 1056, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.7826, "matched_fragments": 1066, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium elephantis", "strain": "strain=DSM 44368", "accession": "GCA_004014805.1", "taxid": 81858, "species_taxid": 81858, "relation_to_type": "type", "validated": true, "ani": 80.6071, "matched_fragments": 1035, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium pulveris", "strain": "strain=JCM 6370", "accession": "GCA_010725725.1", "taxid": 36813, "species_taxid": 36813, "relation_to_type": "type", "validated": true, "ani": 80.5739, "matched_fragments": 1041, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium agri", "strain": "strain=JCM 6377", "accession": "GCA_010722915.1", "taxid": 36811, "species_taxid": 36811, "relation_to_type": "type", "validated": true, "ani": 80.0004, "matched_fragments": 965, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aromaticivorans", "strain": "strain=JS19b1", "accession": "GCA_000559085.2", "taxid": 318425, "species_taxid": 318425, "relation_to_type": "type", "validated": true, "ani": 79.4094, "matched_fragments": 792, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aichiense", "strain": "strain=NCTC10820", "accession": "GCA_900453085.1", "taxid": 1799, "species_taxid": 1799, "relation_to_type": "type", "validated": true, "ani": 79.1232, "matched_fragments": 814, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aichiense", "strain": "strain=JCM 6376", "accession": "GCA_010726245.1", "taxid": 1799, "species_taxid": 1799, "relation_to_type": "type", "validated": true, "ani": 79.0648, "matched_fragments": 814, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rhodesiae", "strain": "strain=DSM 44223", "accession": "GCA_002086695.1", "taxid": 36814, "species_taxid": 36814, "relation_to_type": "type", "validated": true, "ani": 79.0172, "matched_fragments": 792, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium helvum", "strain": "strain=JCM 30396", "accession": "GCA_010731895.1", "taxid": 1534349, "species_taxid": 1534349, "relation_to_type": "type", "validated": true, "ani": 78.7714, "matched_fragments": 739, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.32, "strain_heterogeneity": 75.0 }, "gtdb_result": [ { "accession": "GCF_010728925.1", "gtdb_species": "s__Mycobacterium gadium", "ani": 99.993, "matched_fragments": 1932, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002086795.1", "gtdb_species": "s__Mycobacterium tusciae", "ani": 94.5553, "matched_fragments": 1649, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010726765.1", "gtdb_species": "s__Mycobacterium gallinarum", "ani": 93.0375, "matched_fragments": 1712, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002591975.1", "gtdb_species": "s__Mycobacterium neglectum", "ani": 85.5078, "matched_fragments": 1507, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000243415.2", "gtdb_species": "s__Mycobacterium tusciae_A", "ani": 84.8847, "matched_fragments": 1487, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000230895.2", "gtdb_species": "s__Mycobacterium rhodesiae_A", "ani": 84.4789, "matched_fragments": 1538, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010726085.1", "gtdb_species": "s__Mycobacterium moriokaense", "ani": 83.4553, "matched_fragments": 1405, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001722335.1", "gtdb_species": "s__Mycobacterium flavescens_A", "ani": 81.2467, "matched_fragments": 1115, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002245535.1", "gtdb_species": "s__Mycobacterium lehmannii", "ani": 80.8696, "matched_fragments": 1069, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.2034, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.72", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001499855.1", "gtdb_species": "s__Mycobacterium sp001499855", "ani": 80.8213, "matched_fragments": 1047, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.52", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001499905.1", "gtdb_species": "s__Mycobacterium sp001499905", "ani": 80.3611, "matched_fragments": 984, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000559085.1", "gtdb_species": "s__Mycobacterium aromaticivorans", "ani": 79.3978, "matched_fragments": 793, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010726245.1", "gtdb_species": "s__Mycobacterium aichiense", "ani": 79.093, "matched_fragments": 809, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002086695.1", "gtdb_species": "s__Mycobacterium rhodesiae", "ani": 79.0147, "matched_fragments": 791, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002887815.1", "gtdb_species": "s__Mycobacterium sp002887815", "ani": 79.0091, "matched_fragments": 790, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013337765.1", "gtdb_species": "s__Mycobacterium sp003053865", "ani": 78.8892, "matched_fragments": 789, "total_fragments": 1941, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.43", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" } ] }