{ "type": "genome", "identifier": "GCF_025821365.1", "organism": "Mycolicibacterium gadium", "title": "Mycolicibacterium gadium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821365.1", "bioproject": "PRJNA224116", "biosample": "SAMN15569013", "wgs_master": "JACKRT000000000.1", "refseq_category": "na", "taxid": "1794", "species_taxid": "1794", "organism_name": "Mycolicibacterium gadium", "infraspecific_name": "strain=DSM 44077", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582136v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/365/GCF_025821365.1_ASM2582136v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6535449", "genome_size_ungapped": "6535349", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "1190", "contig_count": "1190", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821365.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "7270", "protein_coding_gene_count": "6603", "non_coding_gene_count": "63", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium gadium" ], "sample_taxid": [ "1794" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.827 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 9.32, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6535449", "Number of Sequences": "1190", "Longest Sequences (bp)": "415048", "N50 (bp)": "151811", "Gap Ratio (%)": "0.007008", "GCcontent (%)": "65.7", "Number of CDSs": "5969", "Average Protein Length": "307.6", "Coding Ratio (%)": "84.3", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium gadium", "strain": "strain=JCM 12688", "accession": "GCA_010728925.1", "taxid": 1794, "species_taxid": 1794, "relation_to_type": "type", "validated": true, "ani": 99.993, "matched_fragments": 1932, "total_fragments": 1941, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium tusciae", "strain": "strain=DSM 44338", "accession": "GCA_002086795.1", "taxid": 75922, "species_taxid": 75922, "relation_to_type": "type", "validated": true, "ani": 94.5553, "matched_fragments": 1649, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=JCM 6375", "accession": "GCA_010726085.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 83.4421, "matched_fragments": 1407, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=CIP105393", "accession": "GCA_002086395.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 83.4301, "matched_fragments": 1407, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 81.5964, "matched_fragments": 1144, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lehmannii", "strain": "strain=CECT 8763", "accession": "GCA_002245535.1", "taxid": 2048550, "species_taxid": 2048550, "relation_to_type": "type", "validated": true, "ani": 80.8796, "matched_fragments": 1067, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium malmesburyense", "strain": "strain=WCM 7299", "accession": "GCA_001050015.1", "taxid": 1566886, "species_taxid": 1566886, "relation_to_type": "type", "validated": true, "ani": 80.8445, "matched_fragments": 1056, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.7826, "matched_fragments": 1066, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium elephantis", "strain": "strain=DSM 44368", "accession": "GCA_004014805.1", "taxid": 81858, "species_taxid": 81858, "relation_to_type": "type", "validated": true, "ani": 80.6071, "matched_fragments": 1035, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium pulveris", "strain": "strain=JCM 6370", "accession": "GCA_010725725.1", "taxid": 36813, "species_taxid": 36813, "relation_to_type": "type", "validated": true, "ani": 80.5739, "matched_fragments": 1041, "total_fragments": 1941, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium 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