{ "type": "genome", "identifier": "GCF_025821385.1", "organism": "Mycobacterium szulgai", "title": "Mycobacterium szulgai", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821385.1", "bioproject": "PRJNA224116", "biosample": "SAMN15569012", "wgs_master": "JACKRU000000000.1", "refseq_category": "na", "taxid": "1787", "species_taxid": "1787", "organism_name": "Mycobacterium szulgai", "infraspecific_name": "strain=DSM 44166", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582138v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/385/GCF_025821385.1_ASM2582138v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6884753", "genome_size_ungapped": "6883522", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "907", "contig_count": "907", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821385.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6825", "protein_coding_gene_count": "5534", "non_coding_gene_count": "62", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium szulgai" ], "sample_taxid": [ "1787" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.932 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 95.83, "contamination": 13.54, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6884753", "Number of Sequences": "907", "Longest Sequences (bp)": "173473", "N50 (bp)": "41996", "Gap Ratio (%)": "0.017880", "GCcontent (%)": "65.4", "Number of CDSs": "6183", "Average Protein Length": "312.4", "Coding Ratio (%)": "84.2", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium szulgai", "strain": "strain=DSM 44166", "accession": "GCA_002116635.1", "taxid": 1787, "species_taxid": 1787, "relation_to_type": "type", "validated": true, "ani": 99.9265, "matched_fragments": 1970, "total_fragments": 2085, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium angelicum", "strain": "strain=DSM 45057", "accession": "GCA_002086155.1", "taxid": 470074, "species_taxid": 470074, "relation_to_type": "type", "validated": true, "ani": 93.0851, "matched_fragments": 1816, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=DSM 44577", "accession": "GCA_002102215.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 81.6538, "matched_fragments": 1117, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=JCM 15657", "accession": "GCA_010731535.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 81.5926, "matched_fragments": 1131, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudokansasii", "strain": "strain=MK142", "accession": "GCA_900566075.1", "taxid": 2341080, "species_taxid": 2341080, "relation_to_type": "type", "validated": true, "ani": 81.2411, "matched_fragments": 1209, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium ostraviense", "strain": "strain=241/15", "accession": "GCA_002705925.1", "taxid": 2738409, "species_taxid": 2738409, "relation_to_type": "type", "validated": true, "ani": 81.0636, "matched_fragments": 1207, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium persicum", "strain": "strain=AFPC-000227", "accession": "GCA_002086675.1", "taxid": 1487726, "species_taxid": 1487726, "relation_to_type": "type", "validated": true, "ani": 81.0152, "matched_fragments": 1141, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=CIP 106428", "accession": "GCA_002101745.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 80.9024, "matched_fragments": 1064, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=JCM 13573", "accession": "GCA_010723135.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 80.8719, "matched_fragments": 1062, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=JCM 13573", "accession": "GCA_015689175.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 80.8206, "matched_fragments": 1092, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium attenuatum", "strain": "strain=MK41", "accession": "GCA_900566085.1", "taxid": 2341086, "species_taxid": 2341086, "relation_to_type": "type", "validated": true, "ani": 80.6979, "matched_fragments": 1137, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium gordonae", "strain": "strain=DSM 44160", "accession": "GCA_002101675.1", "taxid": 1778, "species_taxid": 1778, "relation_to_type": "type", "validated": true, "ani": 80.6958, "matched_fragments": 1189, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marseillense", "strain": "strain=DSM 45437", "accession": "GCA_002086345.1", "taxid": 701042, "species_taxid": 701042, "relation_to_type": "type", "validated": true, "ani": 80.635, "matched_fragments": 1019, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marseillense", "strain": "strain=JCM 17324", "accession": "GCA_010731675.1", "taxid": 701042, "species_taxid": 701042, "relation_to_type": "type", "validated": true, "ani": 80.6039, "matched_fragments": 1033, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium vicinigordonae", "strain": "strain=24", "accession": "GCA_013466425.1", "taxid": 1719132, "species_taxid": 1719132, "relation_to_type": "type", "validated": true, "ani": 80.2116, "matched_fragments": 1046, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_001515365.1", "taxid": 265949, "species_taxid": 265949, "relation_to_type": "suspected-type", "validated": true, "ani": 80.056, "matched_fragments": 1019, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_003584745.1", "taxid": 265949, "species_taxid": 265949, 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