{ "tc_result": [ { "organism_name": "Mycolicibacter minnesotensis", "strain": "strain=JCM 17932", "accession": "GCA_010731755.1", "taxid": 1118379, "species_taxid": 1118379, "relation_to_type": "type", "validated": true, "ani": 99.9945, "matched_fragments": 1379, "total_fragments": 1380, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacter minnesotensis", "strain": "strain=DSM 45633", "accession": "GCA_002086405.1", "taxid": 1118379, "species_taxid": 1118379, "relation_to_type": "type", "validated": true, "ani": 99.9818, "matched_fragments": 1355, "total_fragments": 1380, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacter arupensis", "strain": "strain=DSM 44942", "accession": "GCA_002086515.1", "taxid": 342002, "species_taxid": 342002, "relation_to_type": "type", "validated": true, "ani": 90.7455, "matched_fragments": 1202, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter nonchromogenicus", "strain": "strain=DSM 44164", "accession": "GCA_002101775.1", "taxid": 1782, "species_taxid": 1782, "relation_to_type": "type", "validated": true, "ani": 85.3163, "matched_fragments": 1094, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter engbaekii", "strain": "strain=ATCC 27353", "accession": "GCA_002101585.1", "taxid": 188915, "species_taxid": 188915, "relation_to_type": "type", "validated": true, "ani": 84.7381, "matched_fragments": 1080, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter longobardus", "strain": "strain=DSM 45394", "accession": "GCA_002102265.1", "taxid": 1108812, "species_taxid": 1108812, "relation_to_type": "type", "validated": true, "ani": 84.7131, "matched_fragments": 1051, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter hiberniae", "strain": "strain=ATCC 49874", "accession": "GCA_002101655.1", "taxid": 29314, "species_taxid": 29314, "relation_to_type": "type", "validated": true, "ani": 84.5485, "matched_fragments": 1075, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter hiberniae", "strain": "strain=JCM 13571", "accession": "GCA_010729485.1", "taxid": 29314, "species_taxid": 29314, "relation_to_type": "type", "validated": true, "ani": 84.4926, "matched_fragments": 1105, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter senuensis", "strain": "strain=DSM 44999", "accession": "GCA_002101885.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": "type", "validated": true, "ani": 83.2547, "matched_fragments": 1017, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 78.9056, "matched_fragments": 590, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium agri", "strain": "strain=JCM 6377", "accession": "GCA_010722915.1", "taxid": 36811, "species_taxid": 36811, "relation_to_type": "type", "validated": true, "ani": 78.5373, "matched_fragments": 530, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium agri", "strain": "strain=CCUG37673", "accession": "GCA_002553505.1", "taxid": 36811, "species_taxid": 36811, "relation_to_type": "type", "validated": true, "ani": 78.5184, "matched_fragments": 519, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium gadium", "strain": "strain=JCM 12688", "accession": "GCA_010728925.1", "taxid": 1794, "species_taxid": 1794, "relation_to_type": "type", "validated": true, "ani": 78.2497, "matched_fragments": 455, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=JCM 6375", "accession": "GCA_010726085.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 78.2421, "matched_fragments": 517, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=CIP105393", "accession": "GCA_002086395.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 78.154, "matched_fragments": 515, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium tusciae", "strain": "strain=DSM 44338", "accession": "GCA_002086795.1", "taxid": 75922, "species_taxid": 75922, "relation_to_type": "type", "validated": true, "ani": 78.086, "matched_fragments": 487, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_010731755.1", "gtdb_species": "s__Mycobacterium minnesotense", "ani": 99.9945, "matched_fragments": 1379, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002086515.1", "gtdb_species": "s__Mycobacterium arupense", "ani": 90.7303, "matched_fragments": 1204, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001021505.1", "gtdb_species": "s__Mycobacterium heraklionense_B", "ani": 86.4584, "matched_fragments": 1148, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001673105.1", "gtdb_species": "s__Mycobacterium heraklionense_A", "ani": 86.0041, "matched_fragments": 1169, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000455125.1", "gtdb_species": "s__Mycobacterium sp000455125", "ani": 85.9781, "matched_fragments": 1117, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900078685.2", "gtdb_species": "s__Mycobacterium icosiumassiliensis", "ani": 85.8331, "matched_fragments": 1124, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002101775.1", "gtdb_species": "s__Mycobacterium nonchromogenicum", "ani": 85.2948, "matched_fragments": 1096, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.25", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002101585.1", "gtdb_species": "s__Mycobacterium engbaekii", "ani": 84.7424, "matched_fragments": 1079, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.4017, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002102265.1", "gtdb_species": "s__Mycobacterium longobardum", "ani": 84.7274, "matched_fragments": 1049, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010729485.1", "gtdb_species": "s__Mycobacterium hiberniae", "ani": 84.5247, "matched_fragments": 1103, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.4017, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "95.62", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_010726645.1", "gtdb_species": "s__Mycobacterium duvalii", "ani": 78.713, "matched_fragments": 569, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002553505.1", "gtdb_species": "s__Mycobacterium agri", "ani": 78.5364, "matched_fragments": 516, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001668615.1", "gtdb_species": "s__Mycobacterium sp001668615", "ani": 78.4073, "matched_fragments": 494, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010726085.1", "gtdb_species": "s__Mycobacterium moriokaense", "ani": 78.2716, "matched_fragments": 513, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010728925.1", "gtdb_species": "s__Mycobacterium gadium", "ani": 78.2661, "matched_fragments": 452, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010726765.1", "gtdb_species": "s__Mycobacterium gallinarum", "ani": 78.2192, "matched_fragments": 466, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002086795.1", "gtdb_species": "s__Mycobacterium tusciae", "ani": 78.1056, "matched_fragments": 484, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002591975.1", "gtdb_species": "s__Mycobacterium neglectum", "ani": 77.9813, "matched_fragments": 471, "total_fragments": 1380, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }