{ "type": "genome", "identifier": "GCF_025821425.1", "organism": "Mycolicibacter minnesotensis", "title": "Mycolicibacter minnesotensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821425.1", "bioproject": "PRJNA224116", "biosample": "SAMN15569008", "wgs_master": "JACKRY000000000.1", "refseq_category": "na", "taxid": "1118379", "species_taxid": "1118379", "organism_name": "Mycolicibacter minnesotensis", "infraspecific_name": "strain=DSM 45633", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582142v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/425/GCF_025821425.1_ASM2582142v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4488759", "genome_size_ungapped": "4488679", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "552", "contig_count": "552", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821425.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "4577", "protein_coding_gene_count": "4200", "non_coding_gene_count": "59", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacter minnesotensis" ], "sample_taxid": [ "1118379" ], "sample_host_organism": [ "Sphagnum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Northern Minnesota" ], "sample_host_location_id": [], "data_size": "1.243 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 28.0, "max": 28.0 }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4488759", "Number of Sequences": "552", "Longest Sequences (bp)": "809115", "N50 (bp)": "292668", "Gap Ratio (%)": "0.007931", "GCcontent (%)": "67.0", "Number of CDSs": "3946", "Average Protein Length": "328.3", "Coding Ratio (%)": "86.6", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacter minnesotensis", "strain": "strain=JCM 17932", "accession": "GCA_010731755.1", "taxid": 1118379, "species_taxid": 1118379, "relation_to_type": "type", "validated": true, "ani": 99.9945, "matched_fragments": 1379, 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"organism_name": "Mycolicibacter hiberniae", "strain": "strain=JCM 13571", "accession": "GCA_010729485.1", "taxid": 29314, "species_taxid": 29314, "relation_to_type": "type", "validated": true, "ani": 84.4926, "matched_fragments": 1105, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter senuensis", "strain": "strain=DSM 44999", "accession": "GCA_002101885.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": "type", "validated": true, "ani": 83.2547, "matched_fragments": 1017, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 78.9056, "matched_fragments": 590, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium agri", 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