{ "tc_result": [ { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_003584745.1", "taxid": 265949, "species_taxid": 265949, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9856, "matched_fragments": 1850, "total_fragments": 1856, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_001515365.1", "taxid": 265949, "species_taxid": 265949, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9804, "matched_fragments": 1765, "total_fragments": 1856, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=CCUG20998", "accession": "GCA_003391395.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 98.1863, "matched_fragments": 1785, "total_fragments": 1856, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=DSM 44344", "accession": "GCA_003431645.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 98.1682, "matched_fragments": 1772, "total_fragments": 1856, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=NCTC2275", "accession": "GCA_003431655.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 98.1261, "matched_fragments": 1772, "total_fragments": 1856, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mycobacterium shottsii", "strain": "strain=JCM 12657", "accession": "GCA_010728525.1", "taxid": 133549, "species_taxid": 133549, "relation_to_type": "suspected-type", "validated": true, "ani": 97.5207, "matched_fragments": 1679, "total_fragments": 1856, "ani_threshold": 95, "status": "inconclusive" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003391395.1", "gtdb_species": "s__Mycobacterium marinum", "ani": 98.1863, "matched_fragments": 1785, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "97.50", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.86", "num_clustered_genomes": 40, "status": "conclusive" }, { "accession": "GCF_900566055.1", "gtdb_species": "s__Mycobacterium innocens", "ani": 81.1118, "matched_fragments": 1136, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "98.57", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900292015.1", "gtdb_species": "s__Mycobacterium basiliense", "ani": 81.0452, "matched_fragments": 1231, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002102175.1", "gtdb_species": "s__Mycobacterium gastri", "ani": 81.007, "matched_fragments": 1131, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002705925.1", "gtdb_species": "s__Mycobacterium ostraviense", "ani": 80.9538, "matched_fragments": 1187, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900566075.1", "gtdb_species": "s__Mycobacterium pseudokansasii", "ani": 80.9036, "matched_fragments": 1172, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.48", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002086675.1", "gtdb_species": "s__Mycobacterium persicum", "ani": 80.7927, "matched_fragments": 1111, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_009741445.1", "gtdb_species": "s__Mycobacterium avium", "ani": 80.4533, "matched_fragments": 919, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 96.9043, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.29", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 206, "status": "-" }, { "accession": "GCF_002086155.1", "gtdb_species": "s__Mycobacterium angelicum", "ani": 80.3795, "matched_fragments": 1058, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002104675.1", "gtdb_species": "s__Mycobacterium decipiens", "ani": 80.2851, "matched_fragments": 1001, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002102225.1", "gtdb_species": "s__Mycobacterium interjectum_B", "ani": 80.2701, "matched_fragments": 968, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002116635.1", "gtdb_species": "s__Mycobacterium szulgai", "ani": 80.1444, "matched_fragments": 1060, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003614435.1", "gtdb_species": "s__Mycobacterium paragordonae", "ani": 80.0158, "matched_fragments": 1005, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_015689175.1", "gtdb_species": "s__Mycobacterium kubicae", "ani": 79.982, "matched_fragments": 886, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001417955.2", "gtdb_species": "s__Mycobacterium gordonae_B", "ani": 79.9788, "matched_fragments": 990, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002101675.1", "gtdb_species": "s__Mycobacterium gordonae", "ani": 79.8, "matched_fragments": 978, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_017086405.1", "gtdb_species": "s__Mycobacterium gordonae_D", "ani": 79.761, "matched_fragments": 995, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010729105.1", "gtdb_species": "s__Mycobacterium saskatchewanense", "ani": 79.6692, "matched_fragments": 893, "total_fragments": 1856, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }