{ "type": "genome", "identifier": "GCF_025821505.1", "organism": "Mycobacterium pseudoshottsii", "title": "Mycobacterium pseudoshottsii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821505.1", "bioproject": "PRJNA224116", "biosample": "SAMN15569005", "wgs_master": "JACKSB000000000.1", "refseq_category": "na", "taxid": "265949", "species_taxid": "265949", "organism_name": "Mycobacterium pseudoshottsii", "infraspecific_name": "strain=DSM 45108", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582150v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/505/GCF_025821505.1_ASM2582150v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6004293", "genome_size_ungapped": "6004293", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "468", "contig_count": "468", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821505.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5665", "protein_coding_gene_count": "4800", "non_coding_gene_count": "54", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium pseudoshottsii" ], "sample_taxid": [ "265949" ], "sample_host_organism": [ "Morone saxatilis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.675 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 25.0, "max": 25.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6004293", "Number of Sequences": "468", "Longest Sequences (bp)": "174666", "N50 (bp)": "49183", "Gap Ratio (%)": "0.001882", "GCcontent (%)": "65.8", "Number of CDSs": "5381", "Average Protein Length": "320.1", "Coding Ratio (%)": "86.1", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium pseudoshottsii", "strain": "strain=JCM 15466", "accession": "GCA_003584745.1", "taxid": 265949, "species_taxid": 265949, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9856, 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