{ "type": "genome", "identifier": "GCF_025821545.1", "organism": "Mycolicibacterium setense", "title": "Mycolicibacterium setense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821545.1", "bioproject": "PRJNA224116", "biosample": "SAMN15569006", "wgs_master": "JACKSA000000000.1", "refseq_category": "na", "taxid": "431269", "species_taxid": "431269", "organism_name": "Mycolicibacterium setense", "infraspecific_name": "strain=DSM 45070", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582154v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/545/GCF_025821545.1_ASM2582154v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6535211", "genome_size_ungapped": "6535211", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "494", "contig_count": "494", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821545.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "6582", "protein_coding_gene_count": "6251", "non_coding_gene_count": "58", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium setense" ], "sample_taxid": [ "431269" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium peregrinum", "strain": "strain=DSM 43271", "accession": "GCA_002102345.1", "taxid": 43304, "species_taxid": 43304, "relation_to_type": "type", "validated": true, "ani": 86.4067, "matched_fragments": 1707, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lutetiense", "strain": "strain=DSM 46713", "accession": "GCA_017876775.1", "taxid": 1641992, "species_taxid": 1641992, "relation_to_type": "type", "validated": true, "ani": 86.257, "matched_fragments": 1527, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium alvei", "strain": "strain=JCM 12272", "accession": "GCA_010727325.1", "taxid": 67081, "species_taxid": 67081, "relation_to_type": "type", "validated": true, "ani": 86.0685, "matched_fragments": 1458, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium houstonense", "strain": "strain=type strain: ATCC 49403", "accession": "GCA_900078665.2", "taxid": 146021, "species_taxid": 146021, "relation_to_type": "type", "validated": true, "ani": 85.8513, "matched_fragments": 1617, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. acetamidolyticum", "strain": "strain=JCM6368", "accession": "GCA_001570465.1", "taxid": 144550, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 85.8085, "matched_fragments": 1636, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 85.768, "matched_fragments": 1658, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Mycobacterium] fortunisiensis", "strain": "strain=TNTM28", "accession": "GCA_019050325.1", "taxid": 2600579, "species_taxid": 2600579, "relation_to_type": "type", "validated": true, "ani": 85.022, "matched_fragments": 1453, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 82.0681, "matched_fragments": 1332, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 82.0581, "matched_fragments": 1341, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.459, "matched_fragments": 850, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, "relation_to_type": "type", "validated": true, "ani": 79.2146, "matched_fragments": 863, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mengxianglii", "strain": "strain=Z-34", "accession": "GCA_015710575.2", "taxid": 2736649, "species_taxid": 2736649, "relation_to_type": "type", "validated": true, "ani": 79.0793, "matched_fragments": 794, "total_fragments": 2085, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium 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