{
    "type": "genome",
    "identifier": "GCF_025821565.1",
    "organism": "Mycolicibacterium vanbaalenii PYR-1",
    "title": "Mycolicibacterium vanbaalenii PYR-1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025821565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15569003",
        "wgs_master": "JACKSD000000000.1",
        "refseq_category": "na",
        "taxid": "350058",
        "species_taxid": "110539",
        "organism_name": "Mycolicibacterium vanbaalenii PYR-1",
        "infraspecific_name": "strain=DSM 7251",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/24",
        "asm_name": "ASM2582156v1",
        "asm_submitter": "Uppsala University",
        "gbrs_paired_asm": "GCA_025821565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/565/GCF_025821565.1_ASM2582156v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6415222",
        "genome_size_ungapped": "6414808",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "407",
        "contig_count": "407",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025821565.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "6493",
        "protein_coding_gene_count": "5515",
        "non_coding_gene_count": "56",
        "pubmed_id": "36243697"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-24",
    "dateModified": "2022-10-24",
    "datePublished": "2022-10-24",
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        "sample_organism": [
            "Mycolicibacterium vanbaalenii PYR-1"
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        "sample_taxid": [
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        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Texas"
        ],
        "sample_host_location_id": [],
        "data_size": "1.770 MB",
        "sample_ph_range": {
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            "max": null
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        "sample_temperature_range": {
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            "max": 30.0
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        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
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        "Number of Sequences": "407",
        "Longest Sequences (bp)": "158844",
        "N50 (bp)": "55733",
        "Gap Ratio (%)": "0.006453",
        "GCcontent (%)": "67.8",
        "Number of CDSs": "6379",
        "Average Protein Length": "294.2",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Mycolicibacterium",
        "vanbaalenii",
        "PYR-1"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}