{ "type": "genome", "identifier": "GCF_025821645.1", "organism": "Mycobacterium lacus", "title": "Mycobacterium lacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821645.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568998", "wgs_master": "JACKSI000000000.1", "refseq_category": "na", "taxid": "169765", "species_taxid": "169765", "organism_name": "Mycobacterium lacus", "infraspecific_name": "strain=DSM 44577", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582164v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/645/GCF_025821645.1_ASM2582164v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4899677", "genome_size_ungapped": "4899517", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "294", "contig_count": "294", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821645.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "4798", "protein_coding_gene_count": "4299", "non_coding_gene_count": "51", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium lacus" ], "sample_taxid": [ "169765" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Ontario" ], "sample_host_location_id": [], "data_size": "1.362 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4899677", "Number of Sequences": "294", "Longest Sequences (bp)": "148416", "N50 (bp)": "41151", "Gap Ratio (%)": "0.009715", "GCcontent (%)": "66.8", "Number of CDSs": "4438", "Average Protein Length": "312.8", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium lacus", "strain": "strain=JCM 15657", "accession": "GCA_010731535.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 99.981, "matched_fragments": 1500, "total_fragments": 1501, "ani_threshold": 95, 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"Mycobacterium riyadhense", "strain": "strain=DSM 45176", "accession": "GCA_002101845.1", "taxid": 486698, "species_taxid": 486698, "relation_to_type": "type", "validated": true, "ani": 83.2297, "matched_fragments": 1168, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium heidelbergense", "strain": "strain=JCM 14842", "accession": "GCA_010730745.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 83.161, "matched_fragments": 1037, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium simulans", "strain": "strain=FI-09026", "accession": "GCA_900232995.1", "taxid": 627089, "species_taxid": 627089, "relation_to_type": "type", "validated": true, "ani": 82.9769, "matched_fragments": 1171, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palustre", "strain": "strain=DSM 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