{
    "type": "genome",
    "identifier": "GCF_025821705.1",
    "organism": "Mycolicibacterium tokaiense",
    "title": "Mycolicibacterium tokaiense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025821705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15568996",
        "wgs_master": "JACKSK000000000.1",
        "refseq_category": "na",
        "taxid": "39695",
        "species_taxid": "39695",
        "organism_name": "Mycolicibacterium tokaiense",
        "infraspecific_name": "strain=DSM 44635",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/24",
        "asm_name": "ASM2582170v1",
        "asm_submitter": "Uppsala University",
        "gbrs_paired_asm": "GCA_025821705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/705/GCF_025821705.1_ASM2582170v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6048932",
        "genome_size_ungapped": "6048932",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "31",
        "contig_count": "31",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025821705.1-RS_2024_07_07",
        "annotation_date": "2024-07-07",
        "total_gene_count": "5883",
        "protein_coding_gene_count": "5771",
        "non_coding_gene_count": "55",
        "pubmed_id": "36243697"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-24",
    "dateModified": "2022-10-24",
    "datePublished": "2022-10-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycolicibacterium tokaiense"
        ],
        "sample_taxid": [
            "39695"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Tokai district"
        ],
        "sample_host_location_id": [],
        "data_size": "1.652 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 37.0,
            "max": 37.0
        },
        "completeness": 70.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6048932",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "754060",
        "N50 (bp)": "390989",
        "Gap Ratio (%)": "0.001091",
        "GCcontent (%)": "67.9",
        "Number of CDSs": "5833",
        "Average Protein Length": "323.5",
        "Coding Ratio (%)": "93.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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            {
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            {
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                "taxid": 2034511,
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                "validated": true,
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                "matched_fragments": 909,
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                "species_taxid": 1771,
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                "ani": 80.2617,
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                "total_fragments": 2006,
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                "status": "below_threshold"
            },
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                "organism_name": "Mycolicibacterium cosmeticum",
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                "accession": "GCA_005670675.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_000613185.1",
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                "matched_fragments": 934,
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            },
            {
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            },
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                "species_taxid": 758802,
                "relation_to_type": "type",
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            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Candidatus Mycolicibacterium alkanivorans",
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                "accession": "GCA_022760805.1",
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                "matched_fragments": 621,
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                "organism_name": "Mycobacterium crocinum",
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                "accession": "GCA_022370635.3",
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                "relation_to_type": "type",
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                "organism_name": "Mycolicibacterium helvum",
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                "total_fragments": 2006,
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                "status": "below_threshold"
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                "organism_name": "Mycolicibacter engbaekii",
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                "accession": "GCF_001667275.1",
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                "accession": "GCF_002102155.1",
                "gtdb_species": "s__Mycobacterium europaeum",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
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                "mean_intra_species_af": "0.97",
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}