{ "tc_result": [ { "organism_name": "Mycolicibacterium chitae", "strain": "strain=NCTC10485", "accession": "GCA_900637205.1", "taxid": 1792, "species_taxid": 1792, "relation_to_type": "type", "validated": true, "ani": 99.9919, "matched_fragments": 1701, "total_fragments": 1702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium chitae", "strain": "strain=JCM 12403", "accession": "GCA_010727725.1", "taxid": 1792, "species_taxid": 1792, "relation_to_type": "type", "validated": true, "ani": 99.9878, "matched_fragments": 1700, "total_fragments": 1702, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium confluentis", "strain": "strain=JCM 13671", "accession": "GCA_010729895.1", "taxid": 28047, "species_taxid": 28047, "relation_to_type": "type", "validated": true, "ani": 82.0137, "matched_fragments": 1086, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=DSM 44179", "accession": "GCA_002101995.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 81.9065, "matched_fragments": 830, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 81.8928, "matched_fragments": 838, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palauense", "strain": "strain=CECT 8779", "accession": "GCA_002592005.1", "taxid": 2034511, "species_taxid": 2034511, "relation_to_type": "type", "validated": true, "ani": 81.3383, "matched_fragments": 937, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium brumae", "strain": "strain=ATCC 51384", "accession": "GCA_025215495.1", "taxid": 85968, "species_taxid": 85968, "relation_to_type": "type", "validated": true, "ani": 80.9822, "matched_fragments": 718, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 80.9628, "matched_fragments": 877, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium brumae", "strain": "strain=DSM 44177", "accession": "GCA_004014795.1", "taxid": 85968, "species_taxid": 85968, "relation_to_type": "type", "validated": true, "ani": 80.9602, "matched_fragments": 709, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium houstonense", "strain": "strain=type strain: ATCC 49403", "accession": "GCA_900078665.2", "taxid": 146021, "species_taxid": 146021, "relation_to_type": "type", "validated": true, "ani": 80.4862, "matched_fragments": 901, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium pulveris", "strain": "strain=JCM 6370", "accession": "GCA_010725725.1", "taxid": 36813, "species_taxid": 36813, "relation_to_type": "type", "validated": true, "ani": 80.3093, "matched_fragments": 886, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 80.2568, "matched_fragments": 829, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium aquaticum", "strain": "strain=RW6", "accession": "GCA_002086485.1", "taxid": 1927124, "species_taxid": 1927124, "relation_to_type": "type", "validated": true, "ani": 80.1607, "matched_fragments": 834, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 80.1251, "matched_fragments": 751, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 80.087, "matched_fragments": 850, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, "relation_to_type": "type", "validated": true, "ani": 80.0811, "matched_fragments": 826, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 80.043, "matched_fragments": 838, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium neumannii", "strain": "strain=CECT 8766", "accession": "GCA_002245615.1", "taxid": 2048551, "species_taxid": 2048551, "relation_to_type": "type", "validated": true, "ani": 80.0373, "matched_fragments": 803, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 80.0195, "matched_fragments": 876, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 79.9773, "matched_fragments": 880, "total_fragments": 1702, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637205.1", "gtdb_species": "s__Mycobacterium chitae", "ani": 99.9919, "matched_fragments": 1701, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_010729895.1", "gtdb_species": "s__Mycobacterium confluentis", "ani": 81.9935, "matched_fragments": 1089, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001667265.1", "gtdb_species": "s__Mycobacterium sp001667265", "ani": 81.9334, "matched_fragments": 1058, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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"total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001668625.1", "gtdb_species": "s__Mycobacterium sp001668625", "ani": 80.5817, "matched_fragments": 690, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000612725.1", "gtdb_species": "s__Mycobacterium austroafricanum", "ani": 80.4987, "matched_fragments": 914, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001457595.1", "gtdb_species": "s__Mycobacterium smegmatis", "ani": 80.461, "matched_fragments": 937, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 32, "status": "-" }, { "accession": "GCF_900187065.1", "gtdb_species": "s__Mycobacterium thermoresistibile", "ani": 80.3892, "matched_fragments": 845, "total_fragments": 1702, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002157835.1", "gtdb_species": "s__Mycobacterium dioxanotrophicus", "ani": 80.1745, "matched_fragments": 862, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900637135.1", "gtdb_species": "s__Mycobacterium flavescens", "ani": 80.0456, "matched_fragments": 819, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.2034, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "96.77", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_010727475.1", "gtdb_species": "s__Mycobacterium mageritense", "ani": 79.9882, "matched_fragments": 878, "total_fragments": 1702, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" } ] }