{ "type": "genome", "identifier": "GCF_025821735.1", "organism": "Mycobacterium riyadhense", "title": "Mycobacterium riyadhense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821735.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568995", "wgs_master": "JACKSL000000000.1", "refseq_category": "na", "taxid": "486698", "species_taxid": "486698", "organism_name": "Mycobacterium riyadhense", "infraspecific_name": "strain=DSM 45176", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582173v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/735/GCF_025821735.1_ASM2582173v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6422095", "genome_size_ungapped": "6421874", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "219", "contig_count": "219", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821735.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5818", "protein_coding_gene_count": "5356", "non_coding_gene_count": "52", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium riyadhense" ], "sample_taxid": [ "486698" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia: Riyadh, King Faisal Hospital" ], "sample_host_location_id": [], "data_size": "1.784 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6422095", "Number of Sequences": "219", "Longest Sequences (bp)": "450704", "N50 (bp)": "100541", "Gap Ratio (%)": "0.012270", "GCcontent (%)": "65.5", "Number of CDSs": "5556", "Average Protein Length": "332.0", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "13" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium riyadhense", "strain": "strain=DSM 45176", "accession": "GCA_002101845.1", "taxid": 486698, "species_taxid": 486698, "relation_to_type": "type", "validated": true, "ani": 99.8922, "matched_fragments": 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"Mycobacterium shinjukuense", "strain": "strain=JCM 14233", "accession": "GCA_010730055.1", "taxid": 398694, "species_taxid": 398694, "relation_to_type": "type", "validated": true, "ani": 82.4999, "matched_fragments": 1115, "total_fragments": 2046, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium heidelbergense", "strain": "strain=JCM 14842", "accession": "GCA_010730745.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 81.7456, "matched_fragments": 1038, "total_fragments": 2046, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium tuberculosis variant pinnipedii", "strain": "strain=ATCC BAA-688", "accession": "GCA_002982275.1", "taxid": 194542, "species_taxid": 1773, "relation_to_type": "type", "validated": true, "ani": 81.6183, "matched_fragments": 1022, "total_fragments": 2046, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium 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