{ "type": "genome", "identifier": "GCF_025821915.1", "organism": "Mycobacterium bohemicum", "title": "Mycobacterium bohemicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821915.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568985", "wgs_master": "JACKSV000000000.1", "refseq_category": "na", "taxid": "56425", "species_taxid": "56425", "organism_name": "Mycobacterium bohemicum", "infraspecific_name": "strain=DSM 44277", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582191v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/915/GCF_025821915.1_ASM2582191v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5344569", "genome_size_ungapped": "5344360", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "134", "contig_count": "134", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821915.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5086", "protein_coding_gene_count": "4830", "non_coding_gene_count": "52", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium bohemicum" ], "sample_taxid": [ "56425" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic: Ostrava" ], "sample_host_location_id": [], "data_size": "1.463 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5344569", "Number of Sequences": "134", "Longest Sequences (bp)": "251434", "N50 (bp)": "106976", "Gap Ratio (%)": "0.005520", "GCcontent (%)": "69.2", "Number of CDSs": "4933", "Average Protein Length": "322.9", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 99.9801, "matched_fragments": 1701, "total_fragments": 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"organism_name": "Mycobacterium heidelbergense", "strain": "strain=JCM 14842", "accession": "GCA_010730745.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 84.0824, "matched_fragments": 1176, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium saskatchewanense", "strain": "strain=DSM 44616", "accession": "GCA_002101875.1", "taxid": 220927, "species_taxid": 220927, "relation_to_type": "type", "validated": true, "ani": 84.0534, "matched_fragments": 1252, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium saskatchewanense", "strain": "strain=JCM 13016", "accession": "GCA_010729105.1", "taxid": 220927, "species_taxid": 220927, "relation_to_type": "type", "validated": true, "ani": 84.0269, "matched_fragments": 1286, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=ATCC 25291", "accession": "GCA_000174035.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 83.7535, "matched_fragments": 1076, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palustre", "strain": "strain=DSM 44572", "accession": "GCA_002101785.1", "taxid": 153971, "species_taxid": 153971, "relation_to_type": "type", "validated": true, "ani": 83.7145, "matched_fragments": 1183, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 83.7064, "matched_fragments": 1177, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium seoulense", "strain": "strain=JCM 16018", "accession": "GCA_010731595.1", "taxid": 386911, "species_taxid": 386911, "relation_to_type": "type", "validated": true, "ani": 83.5994, "matched_fragments": 1255, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=DSM 44553", "accession": "GCA_002102335.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 83.3055, "matched_fragments": 1216, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium parmense", "strain": "strain=JCM 14742", "accession": "GCA_010730575.1", "taxid": 185642, "species_taxid": 185642, "relation_to_type": "type", "validated": true, "ani": 83.2984, "matched_fragments": 1237, "total_fragments": 1726, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_000277125.1", 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