{ "type": "genome", "identifier": "GCF_025821945.1", "organism": "Mycobacterium heidelbergense", "title": "Mycobacterium heidelbergense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025821945.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568984", "wgs_master": "JACKSW000000000.1", "refseq_category": "na", "taxid": "53376", "species_taxid": "53376", "organism_name": "Mycobacterium heidelbergense", "infraspecific_name": "strain=DSM 44471", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582194v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025821945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/945/GCF_025821945.1_ASM2582194v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5007142", "genome_size_ungapped": "5006588", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "132", "contig_count": "132", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025821945.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "4776", "protein_coding_gene_count": "4507", "non_coding_gene_count": "51", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium heidelbergense" ], "sample_taxid": [ "53376" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.380 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5007142", "Number of Sequences": "132", "Longest Sequences (bp)": "237620", "N50 (bp)": "83441", "Gap Ratio (%)": "0.013121", "GCcontent (%)": "68.0", "Number of CDSs": "4602", "Average Protein Length": "315.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium heidelbergense", "strain": "strain=JCM 14842", "accession": "GCA_010730745.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 99.988, "matched_fragments": 1602, 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"below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 84.4539, "matched_fragments": 1126, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium helveticum", "strain": "strain=16-83", "accession": "GCA_007714205.1", "taxid": 2592811, "species_taxid": 2592811, "relation_to_type": "type", "validated": true, "ani": 84.2957, "matched_fragments": 1021, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 84.2214, "matched_fragments": 1144, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare subsp. chimaera", "strain": "strain=DSM 44623", "accession": "GCA_002219285.1", "taxid": 222805, "species_taxid": 1767, "relation_to_type": "type", "validated": true, "ani": 84.1895, "matched_fragments": 1123, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_001053185.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 84.1615, "matched_fragments": 1096, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare subsp. yongonense", "strain": "strain=05-1390", "accession": "GCA_000418535.2", "taxid": 1203599, "species_taxid": 1767, "relation_to_type": "type", "validated": true, "ani": 84.1447, "matched_fragments": 1147, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=JCM 15657", "accession": "GCA_010731535.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 83.1958, "matched_fragments": 1034, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium angelicum", "strain": "strain=DSM 45057", "accession": "GCA_002086155.1", "taxid": 470074, "species_taxid": 470074, "relation_to_type": "type", "validated": true, "ani": 82.0538, "matched_fragments": 1055, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium simiae", "strain": "strain=JCM 12377", "accession": "GCA_010727605.1", "taxid": 1784, "species_taxid": 1784, "relation_to_type": "type", "validated": true, "ani": 81.9269, "matched_fragments": 1039, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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