{ "tc_result": [ { "organism_name": "Mycolicibacter terrae", "strain": "strain=JCM 12143", "accession": "GCA_010727125.1", "taxid": 1788, "species_taxid": 1788, "relation_to_type": "type", "validated": true, "ani": 99.9928, "matched_fragments": 1447, "total_fragments": 1448, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacter terrae", "strain": "strain=CIP 104321", "accession": "GCA_002101955.1", "taxid": 1788, "species_taxid": 1788, "relation_to_type": "type", "validated": true, "ani": 99.99, "matched_fragments": 1424, "total_fragments": 1448, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacter kumamotonensis", "strain": "strain=CST 7247", "accession": "GCA_010093495.1", "taxid": 354243, "species_taxid": 354243, "relation_to_type": "type", "validated": true, "ani": 91.2483, "matched_fragments": 1224, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter kumamotonensis", "strain": "strain=DSM 45093", "accession": "GCA_002086285.1", "taxid": 354243, "species_taxid": 354243, "relation_to_type": "type", "validated": true, "ani": 91.2347, "matched_fragments": 1287, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter senuensis", "strain": "strain=JCM 16017", "accession": "GCA_010723225.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": "type", "validated": true, "ani": 87.5897, "matched_fragments": 1190, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter senuensis", "strain": "strain=DSM 44999", "accession": "GCA_002101885.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": "type", "validated": true, "ani": 87.584, "matched_fragments": 1171, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter longobardus", "strain": "strain=DSM 45394", "accession": "GCA_002102265.1", "taxid": 1108812, "species_taxid": 1108812, "relation_to_type": "type", "validated": true, "ani": 86.5649, "matched_fragments": 1093, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter nonchromogenicus", "strain": "strain=DSM 44164", "accession": "GCA_002101775.1", "taxid": 1782, "species_taxid": 1782, "relation_to_type": "type", "validated": true, "ani": 84.6336, "matched_fragments": 1095, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter engbaekii", "strain": "strain=ATCC 27353", "accession": "GCA_002101585.1", "taxid": 188915, "species_taxid": 188915, "relation_to_type": "type", "validated": true, "ani": 84.3857, "matched_fragments": 1086, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter minnesotensis", "strain": "strain=JCM 17932", "accession": "GCA_010731755.1", "taxid": 1118379, "species_taxid": 1118379, "relation_to_type": "type", "validated": true, "ani": 83.5567, "matched_fragments": 999, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010727125.1", "gtdb_species": "s__Mycobacterium terrae", "ani": 99.9928, "matched_fragments": 1447, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_002086285.1", "gtdb_species": "s__Mycobacterium kumamotonense", "ani": 91.2206, "matched_fragments": 1289, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.48", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001667945.1", "gtdb_species": "s__Mycobacterium sinense_B", "ani": 89.2046, "matched_fragments": 1172, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.42", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003284925.1", "gtdb_species": "s__Mycobacterium algericum_A", "ani": 87.7979, "matched_fragments": 1046, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002086455.1", "gtdb_species": "s__Mycobacterium algericum", "ani": 87.5883, "matched_fragments": 1176, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.66", "min_intra_species_ani": "97.92", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002101885.1", "gtdb_species": "s__Mycobacterium senuense", "ani": 87.587, "matched_fragments": 1170, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002102265.1", "gtdb_species": "s__Mycobacterium longobardum", "ani": 86.5553, "matched_fragments": 1095, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001021505.1", "gtdb_species": "s__Mycobacterium heraklionense_B", "ani": 85.757, "matched_fragments": 1152, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001673105.1", "gtdb_species": "s__Mycobacterium heraklionense_A", "ani": 85.1525, "matched_fragments": 1142, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900078685.2", "gtdb_species": "s__Mycobacterium icosiumassiliensis", "ani": 85.1064, "matched_fragments": 1073, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000455125.1", "gtdb_species": "s__Mycobacterium sp000455125", "ani": 85.0393, "matched_fragments": 1104, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002101585.1", "gtdb_species": "s__Mycobacterium engbaekii", "ani": 84.382, "matched_fragments": 1087, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.4017, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010731755.1", "gtdb_species": "s__Mycobacterium minnesotense", "ani": 83.5207, "matched_fragments": 1003, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }