{ "type": "genome", "identifier": "GCF_025822555.1", "organism": "Mycobacterium hackensackense", "title": "Mycobacterium hackensackense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025822555.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568952", "wgs_master": "JACKUC000000000.1", "refseq_category": "reference genome", "taxid": "228909", "species_taxid": "228909", "organism_name": "Mycobacterium hackensackense", "infraspecific_name": "strain=DSM 44833", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582255v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025822555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/822/555/GCF_025822555.1_ASM2582255v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6709978", "genome_size_ungapped": "6709978", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025822555.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6643", "protein_coding_gene_count": "6492", "non_coding_gene_count": "53", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium hackensackense" ], "sample_taxid": [ "228909" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Hackensack" ], "sample_host_location_id": [], "data_size": "1.840 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6709978", "Number of Sequences": "53", "Longest Sequences (bp)": "2203119", "N50 (bp)": "1317408", "Gap Ratio (%)": "0.000447", "GCcontent (%)": "67.0", "Number of CDSs": "6591", "Average Protein Length": "312.1", "Coding Ratio (%)": "92.0", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium fluoranthenivorans", "strain": "strain=DSM 44556", "accession": "GCA_011758805.1", "taxid": 258505, "species_taxid": 258505, "relation_to_type": "type", "validated": true, "ani": 96.0204, "matched_fragments": 1813, "total_fragments": 2218, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_000613185.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 85.0286, "matched_fragments": 1558, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_005670675.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 85.0108, "matched_fragments": 1538, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=JCM15298", "accession": "GCA_001570445.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 84.9376, "matched_fragments": 1467, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=CCUG 47953", "accession": "GCA_002101555.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 84.8671, "matched_fragments": 1485, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium bacteremicum", "strain": "strain=DSM 45578", "accession": "GCA_002086115.1", "taxid": 564198, "species_taxid": 564198, "relation_to_type": "type", "validated": true, "ani": 81.4336, "matched_fragments": 1156, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neoaurum", "strain": "strain=DSM 44074", "accession": "GCA_005670605.1", "taxid": 1795, "species_taxid": 1795, "relation_to_type": "type", "validated": true, "ani": 80.774, "matched_fragments": 1068, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.449, "matched_fragments": 964, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium boenickei", "strain": "strain=JCM 15653", "accession": "GCA_010731295.1", "taxid": 146017, "species_taxid": 146017, "relation_to_type": "type", "validated": true, "ani": 80.3484, "matched_fragments": 1061, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 80.1305, "matched_fragments": 956, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium dioxanotrophicus", "strain": "strain=PH-06", "accession": "GCA_002157835.1", "taxid": 482462, "species_taxid": 482462, "relation_to_type": "type", "validated": true, "ani": 79.9719, "matched_fragments": 1043, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 79.966, "matched_fragments": 749, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium arabiense", "strain": "strain=JCM 18538", "accession": "GCA_010731815.2", "taxid": 1286181, "species_taxid": 1286181, "relation_to_type": "type", "validated": true, "ani": 79.781, "matched_fragments": 965, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lacusdiani", "strain": "strain=JXJ CY 35", "accession": "GCA_021916785.1", "taxid": 2895283, "species_taxid": 2895283, "relation_to_type": "type", "validated": true, "ani": 79.7209, "matched_fragments": 996, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.578, "matched_fragments": 867, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium stellerae", "strain": "strain=CECT 8783", "accession": "GCA_003719305.1", "taxid": 2358193, "species_taxid": 2358193, "relation_to_type": "type", "validated": true, "ani": 79.1271, "matched_fragments": 877, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium arosiense", "strain": "strain=DSM 45069", "accession": "GCA_002086125.1", "taxid": 425468, "species_taxid": 425468, "relation_to_type": "type", "validated": true, "ani": 78.7242, "matched_fragments": 662, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter hiberniae", "strain": "strain=ATCC 49874", "accession": "GCA_002101655.1", "taxid": 29314, "species_taxid": 29314, "relation_to_type": "type", "validated": true, "ani": 78.7095, "matched_fragments": 638, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter hiberniae", "strain": "strain=JCM 13571", "accession": "GCA_010729485.1", "taxid": 29314, "species_taxid": 29314, "relation_to_type": "type", "validated": true, "ani": 78.6934, "matched_fragments": 635, "total_fragments": 2218, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacteroides chelonae", "strain": "strain=CCUG 47445", 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