{ "type": "genome", "identifier": "GCF_025822765.1", "organism": "Mycobacterium barrassiae", "title": "Mycobacterium barrassiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025822765.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568944", "wgs_master": "JACKUK000000000.1", "refseq_category": "reference genome", "taxid": "319709", "species_taxid": "319709", "organism_name": "Mycobacterium barrassiae", "infraspecific_name": "strain=CCUG 50398", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582276v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025822765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/822/765/GCF_025822765.1_ASM2582276v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5900227", "genome_size_ungapped": "5900198", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025822765.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5838", "protein_coding_gene_count": "5688", "non_coding_gene_count": "59", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium barrassiae" ], "sample_taxid": [ "319709" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Marseille" ], "sample_host_location_id": [], "data_size": "1.631 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 30.0, "max": 30.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5900227", "Number of Sequences": "49", "Longest Sequences (bp)": "855395", "N50 (bp)": "310873", "Gap Ratio (%)": "0.001729", "GCcontent (%)": "65.9", "Number of CDSs": "5799", "Average Protein Length": "313.7", "Coding Ratio (%)": "92.5", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=JCM 6375", "accession": "GCA_010726085.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 90.7887, "matched_fragments": 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95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 81.568, "matched_fragments": 1089, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium malmesburyense", "strain": "strain=WCM 7299", "accession": "GCA_001050015.1", "taxid": 1566886, "species_taxid": 1566886, "relation_to_type": "type", "validated": true, "ani": 81.4098, "matched_fragments": 1085, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium komanii", "strain": "strain=GPK 1020", "accession": "GCA_001050035.1", "taxid": 1566885, "species_taxid": 1566885, "relation_to_type": "type", "validated": true, "ani": 81.2298, "matched_fragments": 1146, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium neumannii", "strain": "strain=CECT 8766", "accession": "GCA_002245615.1", "taxid": 2048551, "species_taxid": 2048551, "relation_to_type": "type", "validated": true, "ani": 81.0998, "matched_fragments": 1066, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium celeriflavum", "strain": "strain=JCM 18439", "accession": "GCA_010731795.1", "taxid": 1249101, "species_taxid": 1249101, "relation_to_type": "type", "validated": true, "ani": 81.0894, "matched_fragments": 1097, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium celeriflavum", "strain": "strain=DSM 46765", "accession": "GCA_002086175.1", "taxid": 1249101, "species_taxid": 1249101, "relation_to_type": "type", "validated": true, "ani": 81.0533, "matched_fragments": 1076, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chlorophenolicum", "strain": "strain=NBRC 15527", "accession": "GCA_001552315.1", "taxid": 37916, "species_taxid": 37916, "relation_to_type": "type", "validated": true, "ani": 80.4468, "matched_fragments": 1016, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chlorophenolicum", "strain": "strain=DSM 43826", "accession": "GCA_001044235.1", "taxid": 37916, "species_taxid": 37916, "relation_to_type": "type", "validated": true, "ani": 80.3459, "matched_fragments": 1024, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium psychrotolerans", "strain": "strain=JCM 13323", "accession": "GCA_010729305.1", "taxid": 216929, "species_taxid": 216929, "relation_to_type": "type", "validated": true, "ani": 80.1619, "matched_fragments": 981, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 79.7367, "matched_fragments": 944, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium thermoresistibile", "strain": "strain=NCTC10409", "accession": "GCA_900187065.1", "taxid": 1797, "species_taxid": 1797, "relation_to_type": "type", "validated": true, "ani": 79.7147, "matched_fragments": 816, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium thermoresistibile", "strain": "strain=ATCC 19527", "accession": "GCA_000234585.2", "taxid": 1797, "species_taxid": 1797, "relation_to_type": "type", "validated": true, "ani": 79.6981, "matched_fragments": 800, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 79.6052, "matched_fragments": 957, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=MOTT64", "accession": "GCA_000276825.1", "taxid": 1138383, "species_taxid": 1138383, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2343, "matched_fragments": 734, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=KCTC 29084", "accession": "GCA_002104735.1", "taxid": 1138383, "species_taxid": 1138383, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2057, "matched_fragments": 723, "total_fragments": 1946, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium 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