{ "type": "genome", "identifier": "GCF_025822925.1", "organism": "Mycobacterium cookii", "title": "Mycobacterium cookii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025822925.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568939", "wgs_master": "JACKUP000000000.1", "refseq_category": "na", "taxid": "1775", "species_taxid": "1775", "organism_name": "Mycobacterium cookii", "infraspecific_name": "strain=DSM 43922", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582292v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025822925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/822/925/GCF_025822925.1_ASM2582292v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5287989", "genome_size_ungapped": "5287615", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025822925.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5032", "protein_coding_gene_count": "4864", "non_coding_gene_count": "53", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium cookii" ], "sample_taxid": [ "1775" ], "sample_host_organism": [ "Sphagnum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], 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"strain": "strain=JCM 12687", "accession": "GCA_010728725.1", "taxid": 43348, "species_taxid": 43348, "relation_to_type": "type", "validated": true, "ani": 80.9112, "matched_fragments": 997, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=ATCC 25291", "accession": "GCA_000174035.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 80.7937, "matched_fragments": 886, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 80.6811, "matched_fragments": 934, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": 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"taxid": 339268, "species_taxid": 339268, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3615, "matched_fragments": 934, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium seoulense", "strain": "strain=JCM 16018", "accession": "GCA_010731595.1", "taxid": 386911, "species_taxid": 386911, "relation_to_type": "type", "validated": true, "ani": 80.2961, "matched_fragments": 933, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_001053185.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 80.2116, "matched_fragments": 906, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, 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80.1165, "matched_fragments": 916, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium numidiamassiliense", "strain": "strain=AB215", "accession": "GCA_900157365.1", "taxid": 1841861, "species_taxid": 1841861, "relation_to_type": "type", "validated": true, "ani": 80.0426, "matched_fragments": 930, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium noviomagense", "strain": "strain=JCM 16367", "accession": "GCA_010731635.1", "taxid": 459858, "species_taxid": 459858, "relation_to_type": "type", "validated": true, "ani": 79.864, "matched_fragments": 819, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium noviomagense", "strain": "strain=DSM 45145", "accession": "GCA_002086415.1", "taxid": 459858, "species_taxid": 459858, "relation_to_type": "type", "validated": true, "ani": 79.8423, "matched_fragments": 807, 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