{ "type": "genome", "identifier": "GCF_025823075.1", "organism": "Mycolicibacterium fluoranthenivorans", "title": "Mycolicibacterium fluoranthenivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025823075.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568934", "wgs_master": "JACKUU000000000.1", "refseq_category": "na", "taxid": "258505", "species_taxid": "258505", "organism_name": "Mycolicibacterium fluoranthenivorans", "infraspecific_name": "strain=DSM 44556", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582307v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025823075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/823/075/GCF_025823075.1_ASM2582307v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6420585", "genome_size_ungapped": "6420326", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025823075.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "6316", "protein_coding_gene_count": "6153", "non_coding_gene_count": "53", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium fluoranthenivorans" ], "sample_taxid": [ "258505" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], 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95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lacusdiani", "strain": "strain=JXJ CY 35", "accession": "GCA_021916785.1", "taxid": 2895283, "species_taxid": 2895283, "relation_to_type": "type", "validated": true, "ani": 79.9606, "matched_fragments": 967, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium arabiense", "strain": "strain=JCM 18538", "accession": "GCA_010731815.2", "taxid": 1286181, "species_taxid": 1286181, "relation_to_type": "type", "validated": true, "ani": 79.864, "matched_fragments": 932, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.6092, "matched_fragments": 868, "total_fragments": 2121, "ani_threshold": 95, "status": "below_threshold" }, { 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