{ "type": "genome", "identifier": "GCF_025823105.1", "organism": "Mycolicibacterium porcinum", "title": "Mycolicibacterium porcinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025823105.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568926", "wgs_master": "JACKVC000000000.1", "refseq_category": "na", "taxid": "39693", "species_taxid": "39693", "organism_name": "Mycolicibacterium porcinum", "infraspecific_name": "strain=DSM 44242", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582310v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025823105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/823/105/GCF_025823105.1_ASM2582310v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6963272", "genome_size_ungapped": "6963272", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025823105.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6742", "protein_coding_gene_count": "6592", "non_coding_gene_count": "55", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium porcinum" ], "sample_taxid": [ "39693" ], "sample_host_organism": [ "swine" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.913 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6963272", "Number of Sequences": "36", "Longest Sequences (bp)": "1313924", "N50 (bp)": "556691", "Gap Ratio (%)": "0.001135", "GCcontent (%)": "66.7", "Number of CDSs": "6704", "Average Protein Length": "320.8", "Coding Ratio (%)": "92.7", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium boenickei", "strain": "strain=JCM 15653", "accession": "GCA_010731295.1", "taxid": 146017, "species_taxid": 146017, "relation_to_type": "type", "validated": true, "ani": 93.0338, "matched_fragments": 1949, "total_fragments": 2305, 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"below_threshold" }, { "organism_name": "Mycolicibacterium neworleansense", "strain": "strain=type strain: ATCC 49404", "accession": "GCA_001245615.1", "taxid": 146018, "species_taxid": 146018, "relation_to_type": "type", "validated": true, "ani": 88.2301, "matched_fragments": 1766, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium conceptionense", "strain": "strain=CCUG 50187", "accession": "GCA_002102065.1", "taxid": 451644, "species_taxid": 451644, "relation_to_type": "suspected-type", "validated": true, "ani": 88.2166, "matched_fragments": 1712, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium setense", "strain": "strain=DSM 45070", "accession": "GCA_000805385.1", "taxid": 431269, "species_taxid": 431269, "relation_to_type": "type", "validated": true, "ani": 87.2248, "matched_fragments": 1719, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 87.0577, "matched_fragments": 1687, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. acetamidolyticum", "strain": "strain=JCM6368", "accession": "GCA_001570465.1", "taxid": 144550, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 87.0291, "matched_fragments": 1721, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lutetiense", "strain": "strain=DSM 46713", "accession": "GCA_017876775.1", "taxid": 1641992, "species_taxid": 1641992, "relation_to_type": "type", "validated": true, "ani": 86.5179, "matched_fragments": 1522, "total_fragments": 2305, "ani_threshold": 95, "status": 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