{ "type": "genome", "identifier": "GCF_025823135.1", "organism": "Mycolicibacter longobardus", "title": "Mycolicibacter longobardus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025823135.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568922", "wgs_master": "JACKVG000000000.1", "refseq_category": "na", "taxid": "1108812", "species_taxid": "1108812", "organism_name": "Mycolicibacter longobardus", "infraspecific_name": "strain=DSM 45394", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582313v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025823135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/823/135/GCF_025823135.1_ASM2582313v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4546193", "genome_size_ungapped": "4546178", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025823135.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "4375", "protein_coding_gene_count": "4237", "non_coding_gene_count": "52", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacter longobardus" ], "sample_taxid": [ "1108812" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Lombardy" ], "sample_host_location_id": [], "data_size": "1.241 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4546193", "Number of Sequences": "33", "Longest Sequences (bp)": "1630027", "N50 (bp)": "251473", "Gap Ratio (%)": "0.001980", "GCcontent (%)": "68.0", "Number of CDSs": "4317", "Average Protein Length": "324.1", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacter longobardus", "strain": "strain=DSM 45394", "accession": "GCA_002102265.1", "taxid": 1108812, "species_taxid": 1108812, "relation_to_type": "type", "validated": true, "ani": 99.6317, "matched_fragments": 1454, "total_fragments": 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"organism_name": "Mycolicibacter kumamotonensis", "strain": "strain=DSM 45093", "accession": "GCA_002086285.1", "taxid": 354243, "species_taxid": 354243, "relation_to_type": "type", "validated": true, "ani": 86.1347, "matched_fragments": 1167, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter senuensis", "strain": "strain=JCM 16017", "accession": "GCA_010723225.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": "type", "validated": true, "ani": 86.0813, "matched_fragments": 1182, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter nonchromogenicus", "strain": "strain=DSM 44164", "accession": "GCA_002101775.1", "taxid": 1782, "species_taxid": 1782, "relation_to_type": "type", "validated": true, "ani": 85.7046, "matched_fragments": 1138, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter engbaekii", "strain": "strain=ATCC 27353", "accession": "GCA_002101585.1", "taxid": 188915, "species_taxid": 188915, "relation_to_type": "type", "validated": true, "ani": 85.3803, "matched_fragments": 1138, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter hiberniae", "strain": "strain=JCM 13571", "accession": "GCA_010729485.1", "taxid": 29314, "species_taxid": 29314, "relation_to_type": "type", "validated": true, "ani": 85.2842, "matched_fragments": 1124, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter hiberniae", "strain": "strain=ATCC 49874", "accession": "GCA_002101655.1", "taxid": 29314, "species_taxid": 29314, "relation_to_type": "type", "validated": true, "ani": 85.1697, "matched_fragments": 1132, "total_fragments": 1499, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter arupensis", "strain": "strain=DSM 44942", 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