{ "type": "genome", "identifier": "GCF_025823205.1", "organism": "Mycobacterium alsense", "title": "Mycobacterium alsense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025823205.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568921", "wgs_master": "JACKVH000000000.1", "refseq_category": "na", "taxid": "324058", "species_taxid": "324058", "organism_name": "Mycobacterium alsense", "infraspecific_name": "strain=CCUG 55640", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582320v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025823205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/823/205/GCF_025823205.1_ASM2582320v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5715069", "genome_size_ungapped": "5715069", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025823205.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "5381", "protein_coding_gene_count": "5174", "non_coding_gene_count": "66", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium alsense" ], "sample_taxid": [ "324058" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Snderborg" ], "sample_host_location_id": [], "data_size": "1.553 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5715069", "Number of Sequences": "32", "Longest Sequences (bp)": "1907946", "N50 (bp)": "1232280", "Gap Ratio (%)": "0.001207", "GCcontent (%)": "69.3", "Number of CDSs": "5347", "Average Protein Length": "328.7", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "74", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 86.3211, "matched_fragments": 1456, "total_fragments": 1889, 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"below_threshold" }, { "organism_name": "Mycobacterium helveticum", "strain": "strain=16-83", "accession": "GCA_007714205.1", "taxid": 2592811, "species_taxid": 2592811, "relation_to_type": "type", "validated": true, "ani": 83.8804, "matched_fragments": 1104, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=MOTT64", "accession": "GCA_000276825.1", "taxid": 1138383, "species_taxid": 1138383, "relation_to_type": "suspected-type", "validated": true, "ani": 83.8499, "matched_fragments": 1317, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_000172115.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 83.7969, "matched_fragments": 1158, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=JCM 30622", "accession": "GCA_010731935.1", "taxid": 1138383, "species_taxid": 1138383, "relation_to_type": "suspected-type", "validated": true, "ani": 83.7896, "matched_fragments": 1317, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 83.6866, "matched_fragments": 1289, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_001053185.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 83.6189, "matched_fragments": 1237, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium colombiense", "strain": "strain=CECT 3035", "accession": "GCA_002105755.1", "taxid": 339268, "species_taxid": 339268, "relation_to_type": "suspected-type", "validated": true, "ani": 83.5605, "matched_fragments": 1295, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium conspicuum", "strain": "strain=DSM 44136", "accession": "GCA_002102095.1", "taxid": 44010, "species_taxid": 44010, "relation_to_type": "type", "validated": true, "ani": 82.8647, "matched_fragments": 1305, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium conspicuum", "strain": "strain=JCM 14738", "accession": "GCA_010730195.1", "taxid": 44010, "species_taxid": 44010, "relation_to_type": "type", "validated": true, "ani": 82.8111, "matched_fragments": 1304, "total_fragments": 1889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": 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