{ "tc_result": [ { "organism_name": "Mycobacterium fragae", "strain": "strain=DSM 45731", "accession": "GCA_002102185.1", "taxid": 1260918, "species_taxid": 1260918, "relation_to_type": "type", "validated": true, "ani": 99.9872, "matched_fragments": 1548, "total_fragments": 1570, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=DSM 44243", "accession": "GCA_002101595.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 82.9547, "matched_fragments": 1095, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kyorinense", "strain": "strain=KUM060204T", "accession": "GCA_000759695.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 82.9206, "matched_fragments": 1082, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kyorinense", "strain": "strain=DSM 45166", "accession": "GCA_002101735.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 82.9135, "matched_fragments": 1094, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium branderi", "strain": "strain=JCM 12687", "accession": "GCA_010728725.1", "taxid": 43348, "species_taxid": 43348, "relation_to_type": "type", "validated": true, "ani": 82.8152, "matched_fragments": 1131, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium branderi", "strain": "strain=DSM 44624", "accession": "GCA_002086575.1", "taxid": 43348, "species_taxid": 43348, "relation_to_type": "type", "validated": true, "ani": 82.7564, "matched_fragments": 1117, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium noviomagense", "strain": "strain=DSM 45145", "accession": "GCA_002086415.1", "taxid": 459858, "species_taxid": 459858, "relation_to_type": "type", "validated": true, "ani": 81.1358, "matched_fragments": 999, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium noviomagense", "strain": "strain=JCM 16367", "accession": "GCA_010731635.1", "taxid": 459858, "species_taxid": 459858, "relation_to_type": "type", "validated": true, "ani": 81.0737, "matched_fragments": 1028, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium xenopi", "strain": "strain=DSM 43995", "accession": "GCA_002102015.1", "taxid": 1789, "species_taxid": 1789, "relation_to_type": "type", "validated": true, "ani": 80.8701, "matched_fragments": 952, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium cookii", "strain": "strain=JCM 12404", "accession": "GCA_010727945.1", "taxid": 1775, "species_taxid": 1775, "relation_to_type": "type", "validated": true, "ani": 80.8079, "matched_fragments": 1001, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium colombiense", "strain": "strain=CECT 3035", "accession": "GCA_002105755.1", "taxid": 339268, "species_taxid": 339268, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5867, "matched_fragments": 961, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_023278525.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5355, "matched_fragments": 953, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=JCM 6375", "accession": "GCA_010726085.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 78.8474, "matched_fragments": 644, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium moriokaense", "strain": "strain=CIP105393", "accession": "GCA_002086395.1", "taxid": 39691, "species_taxid": 39691, "relation_to_type": "type", "validated": true, "ani": 78.7595, "matched_fragments": 629, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002102185.1", "gtdb_species": "s__Mycobacterium fragae", "ani": 99.9872, "matched_fragments": 1548, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003402475.1", "gtdb_species": "s__Mycobacterium sp003402475", "ani": 83.1253, "matched_fragments": 1129, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002101595.1", "gtdb_species": "s__Mycobacterium celatum", "ani": 82.9702, "matched_fragments": 1095, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002101735.1", "gtdb_species": "s__Mycobacterium kyorinense", "ani": 82.9057, "matched_fragments": 1096, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_010728725.1", "gtdb_species": "s__Mycobacterium branderi", "ani": 82.7907, "matched_fragments": 1132, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019236925.1", "gtdb_species": "s__Mycobacterium sp019236925", "ani": 82.1334, "matched_fragments": 929, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001672775.1", "gtdb_species": "s__Mycobacterium kyorinense_A", "ani": 81.8095, "matched_fragments": 997, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002101905.1", "gtdb_species": "s__Mycobacterium shimoidei", "ani": 81.5819, "matched_fragments": 989, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_010731635.1", "gtdb_species": "s__Mycobacterium noviomagense", "ani": 81.0661, "matched_fragments": 1029, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010727945.1", "gtdb_species": "s__Mycobacterium cookii", "ani": 80.8042, "matched_fragments": 1002, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002105755.1", "gtdb_species": "s__Mycobacterium colombiense", "ani": 80.5914, "matched_fragments": 959, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "97.75", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000277125.1", "gtdb_species": "s__Mycobacterium intracellulare", "ani": 80.5335, "matched_fragments": 954, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "95.71", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 82, "status": "-" }, { "accession": "GCA_019246375.1", "gtdb_species": "s__Mycobacterium sp019246375", "ani": 80.4878, "matched_fragments": 613, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010726085.1", "gtdb_species": "s__Mycobacterium moriokaense", "ani": 78.8483, "matched_fragments": 645, "total_fragments": 1570, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }