{ "type": "genome", "identifier": "GCF_025823255.1", "organism": "Mycobacterium montefiorense", "title": "Mycobacterium montefiorense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025823255.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568917", "wgs_master": "JACKVL000000000.1", "refseq_category": "reference genome", "taxid": "154654", "species_taxid": "154654", "organism_name": "Mycobacterium montefiorense", "infraspecific_name": "strain=DSM 44602", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582325v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025823255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/823/255/GCF_025823255.1_ASM2582325v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5632745", "genome_size_ungapped": "5632684", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025823255.1-RS_2024_12_22", "annotation_date": "2024-12-22", "total_gene_count": "5307", "protein_coding_gene_count": "5017", "non_coding_gene_count": "53", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-24", "dateModified": "2022-10-24", "datePublished": "2022-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium montefiorense" ], "sample_taxid": [ "154654" ], "sample_host_organism": [ "Muraenidae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lentiflavum", "strain": "strain=ATCC 51985", "accession": "GCA_022374895.2", "taxid": 141349, "species_taxid": 141349, "relation_to_type": "type", "validated": true, "ani": 86.2614, "matched_fragments": 1466, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium ahvazicum", "strain": "strain=AFP003", "accession": "GCA_900176255.2", "taxid": 1964395, "species_taxid": 1964395, "relation_to_type": "type", "validated": true, "ani": 86.1059, "matched_fragments": 1482, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium stomatepiae", "strain": "strain=JCM 17783", "accession": "GCA_010731715.1", "taxid": 470076, "species_taxid": 470076, "relation_to_type": "type", "validated": true, "ani": 86.0106, "matched_fragments": 1549, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium genavense", "strain": "strain=ATCC 51234", "accession": "GCA_000526915.1", "taxid": 36812, "species_taxid": 36812, "relation_to_type": "type", "validated": true, "ani": 85.8261, "matched_fragments": 1312, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium sherrisii", "strain": "strain=ATCC BAA-832", "accession": "GCA_002102355.1", "taxid": 243061, "species_taxid": 243061, "relation_to_type": "type", "validated": true, "ani": 83.3645, "matched_fragments": 1351, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium simiae", "strain": "strain=JCM 12377", "accession": "GCA_010727605.1", "taxid": 1784, "species_taxid": 1784, "relation_to_type": "type", "validated": true, "ani": 83.1355, "matched_fragments": 1378, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium numidiamassiliense", "strain": "strain=AB215", "accession": "GCA_900157365.1", "taxid": 1841861, "species_taxid": 1841861, "relation_to_type": "type", "validated": true, "ani": 82.6508, "matched_fragments": 1294, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium nebraskense", "strain": "strain=DSM 44803", "accession": "GCA_002102255.1", "taxid": 244292, "species_taxid": 244292, "relation_to_type": "type", "validated": true, "ani": 82.0785, "matched_fragments": 1212, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium mantenii", "strain": "strain=JCM 18113", "accession": "GCA_010731775.1", "taxid": 560555, "species_taxid": 560555, "relation_to_type": "type", "validated": true, "ani": 82.0768, "matched_fragments": 1220, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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