{ "type": "genome", "identifier": "GCF_025823285.1", "organism": "Mycolicibacterium bacteremicum", "title": "Mycolicibacterium bacteremicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025823285.1", "bioproject": "PRJNA224116", "biosample": "SAMN15568916", "wgs_master": "JACKVM000000000.1", "refseq_category": "na", "taxid": "564198", "species_taxid": "564198", "organism_name": "Mycolicibacterium bacteremicum", "infraspecific_name": "strain=DSM 45578", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/24", "asm_name": "ASM2582328v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_025823285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/823/285/GCF_025823285.1_ASM2582328v1", "excluded_from_refseq": 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"sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.618 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 37.0, "max": 37.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5964132", "Number of Sequences": "16", "Longest Sequences (bp)": "1800830", "N50 (bp)": "1580654", "Gap Ratio (%)": "0.001928", "GCcontent (%)": "68.1", "Number of CDSs": "5733", "Average Protein Length": "324.9", "Coding Ratio (%)": "93.7", "Number of rRNAs": "4", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium bacteremicum", "strain": "strain=DSM 45578", "accession": "GCA_002086115.1", "taxid": 564198, "species_taxid": 564198, "relation_to_type": "type", "validated": true, "ani": 99.9747, "matched_fragments": 1939, 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"below_threshold" }, { "organism_name": "Mycolicibacterium cosmeticum", "strain": "strain=DSM 44829", "accession": "GCA_005670675.1", "taxid": 258533, "species_taxid": 258533, "relation_to_type": "type", "validated": true, "ani": 82.0236, "matched_fragments": 1203, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=JCM15298", "accession": "GCA_001570445.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 81.8327, "matched_fragments": 1112, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fluoranthenivorans", "strain": "strain=DSM 44556", "accession": "GCA_011758805.1", "taxid": 258505, "species_taxid": 258505, "relation_to_type": "type", "validated": true, "ani": 81.4261, "matched_fragments": 1133, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.7692, "matched_fragments": 1054, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 80.3552, "matched_fragments": 983, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium dioxanotrophicus", "strain": "strain=PH-06", "accession": "GCA_002157835.1", "taxid": 482462, "species_taxid": 482462, "relation_to_type": "type", "validated": true, "ani": 80.2724, "matched_fragments": 987, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium aquaticum", "strain": "strain=RW6", "accession": "GCA_002086485.1", "taxid": 1927124, "species_taxid": 1927124, "relation_to_type": "type", "validated": true, "ani": 80.1943, "matched_fragments": 959, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lacusdiani", "strain": "strain=JXJ CY 35", "accession": "GCA_021916785.1", "taxid": 2895283, "species_taxid": 2895283, "relation_to_type": "type", "validated": true, "ani": 80.1929, "matched_fragments": 1007, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 80.0935, "matched_fragments": 1045, "total_fragments": 1981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": 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