{
    "type": "genome",
    "identifier": "GCF_025823305.1",
    "organism": "Mycobacterium florentinum",
    "title": "Mycobacterium florentinum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025823305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15568915",
        "wgs_master": "JACKVN000000000.1",
        "refseq_category": "na",
        "taxid": "292462",
        "species_taxid": "292462",
        "organism_name": "Mycobacterium florentinum",
        "infraspecific_name": "strain=DSM 44852",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/24",
        "asm_name": "ASM2582330v1",
        "asm_submitter": "Uppsala University",
        "gbrs_paired_asm": "GCA_025823305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/823/305/GCF_025823305.1_ASM2582330v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6185517",
        "genome_size_ungapped": "6185446",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "15",
        "contig_count": "15",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025823305.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "5888",
        "protein_coding_gene_count": "5722",
        "non_coding_gene_count": "53",
        "pubmed_id": "36243697"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-24",
    "dateModified": "2022-10-24",
    "datePublished": "2022-10-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycobacterium florentinum"
        ],
        "sample_taxid": [
            "292462"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "1.705 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 37.0,
            "max": 37.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6185517",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "4395056",
        "N50 (bp)": "4395056",
        "Gap Ratio (%)": "0.001552",
        "GCcontent (%)": "66.4",
        "Number of CDSs": "5878",
        "Average Protein Length": "321.7",
        "Coding Ratio (%)": "91.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
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                "organism_name": "Mycobacterium florentinum",
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                "status": "conclusive"
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            {
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                "validated": true,
                "ani": 99.9924,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycobacterium stomatepiae",
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                "species_taxid": 470076,
                "relation_to_type": "type",
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                "ani": 90.3466,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium triplex",
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                "species_taxid": 47839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.4734,
                "matched_fragments": 1751,
                "total_fragments": 2056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium triplex",
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                "ani": 89.4319,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium lentiflavum",
                "strain": "strain=ATCC 51985",
                "accession": "GCA_022374895.2",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium ahvazicum",
                "strain": "strain=AFP003",
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                "species_taxid": 1964395,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3291,
                "matched_fragments": 1579,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium genavense",
                "strain": "strain=ATCC 51234",
                "accession": "GCA_000526915.1",
                "taxid": 36812,
                "species_taxid": 36812,
                "relation_to_type": "type",
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                "ani": 88.2485,
                "matched_fragments": 1399,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium numidiamassiliense",
                "strain": "strain=AB215",
                "accession": "GCA_900157365.1",
                "taxid": 1841861,
                "species_taxid": 1841861,
                "relation_to_type": "type",
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                "ani": 83.3445,
                "matched_fragments": 1373,
                "total_fragments": 2056,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_010730355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
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            {
                "accession": "GCF_010731715.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}