{ "type": "genome", "identifier": "GCF_025847235.1", "organism": "Flavobacterium shii", "title": "Flavobacterium shii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025847235.1", "bioproject": "PRJNA224116", "biosample": "SAMN31327777", "wgs_master": "JAOZEW000000000.1", "refseq_category": "reference genome", "taxid": "2987687", "species_taxid": "2987687", "organism_name": "Flavobacterium shii", "infraspecific_name": "strain=LS1R49", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/25", "asm_name": "ASM2584723v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_025847235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/847/235/GCF_025847235.1_ASM2584723v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5576800", "genome_size_ungapped": "5576800", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025847235.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "4719", "protein_coding_gene_count": "4632", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-25", "dateModified": "2022-10-25", "datePublished": "2022-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium shii" ], "sample_taxid": [ "2987687" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.554 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5576800", "Number of Sequences": "56", "Longest Sequences (bp)": "489867", "N50 (bp)": "186571", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.0", "Number of CDSs": "4620", "Average Protein Length": "349.5", "Coding Ratio (%)": "86.8", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium hydatis", "strain": "strain=DSM 2063", "accession": "GCA_000737695.1", "taxid": 991, "species_taxid": 991, "relation_to_type": 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"status": "below_threshold" }, { "organism_name": "Flavobacterium hydrocarbonoxydans", "strain": "strain=GA093", "accession": "GCA_009789235.1", "taxid": 2683249, "species_taxid": 2683249, "relation_to_type": "type", "validated": true, "ani": 80.0622, "matched_fragments": 742, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium circumlabens", "strain": "strain=CCM 8828", "accession": "GCA_004369705.1", "taxid": 2133765, "species_taxid": 2133765, "relation_to_type": "type", "validated": true, "ani": 79.995, "matched_fragments": 739, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hercynium", "strain": "strain=DSM 18292", "accession": "GCA_002217285.1", "taxid": 387094, "species_taxid": 387094, "relation_to_type": "type", "validated": true, "ani": 79.9756, "matched_fragments": 718, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 79.955, "matched_fragments": 787, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium circumlabens", "strain": "strain=P5626", "accession": "GCA_004345565.1", "taxid": 2133765, "species_taxid": 2133765, "relation_to_type": "type", "validated": true, "ani": 79.9451, "matched_fragments": 741, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium collinsii", "strain": "", "accession": "GCA_902804485.1", "taxid": 1114861, "species_taxid": 1114861, "relation_to_type": "type", "validated": true, "ani": 79.8914, "matched_fragments": 751, "total_fragments": 1835, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": 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