{
    "type": "genome",
    "identifier": "GCF_025907915.1",
    "organism": "Gaoshiqia sediminis",
    "title": "Gaoshiqia sediminis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025907915.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN30697265",
        "wgs_master": "JAPAAF000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2986998",
        "species_taxid": "2986998",
        "organism_name": "Gaoshiqia sediminis",
        "infraspecific_name": "strain=A06",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/29",
        "asm_name": "ASM2590791v1",
        "asm_submitter": "Shandong University",
        "gbrs_paired_asm": "GCA_025907915.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/907/915/GCF_025907915.1_ASM2590791v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4963651",
        "genome_size_ungapped": "4963651",
        "gc_percent": "46.000000",
        "replicon_count": "0",
        "scaffold_count": "169",
        "contig_count": "169",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025907915.1-RS_2024_05_14",
        "annotation_date": "2024-05-14",
        "total_gene_count": "4082",
        "protein_coding_gene_count": "3999",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-29",
    "dateModified": "2022-10-29",
    "datePublished": "2022-10-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gaoshiqia sediminis"
        ],
        "sample_taxid": [
            "2986998"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Weihai, Xiaoshi Island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.415 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4963651",
        "Number of Sequences": "169",
        "Longest Sequences (bp)": "429228",
        "N50 (bp)": "112878",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.0",
        "Number of CDSs": "3936",
        "Average Protein Length": "364.8",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sunxiuqinia dokdonensis",
                "strain": "strain=DH1",
                "accession": "GCA_001270965.1",
                "taxid": 1409788,
                "species_taxid": 1409788,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3188,
                "matched_fragments": 365,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mangrovibacterium diazotrophicum",
                "strain": "strain=DSM 27148",
                "accession": "GCA_003610535.1",
                "taxid": 1261403,
                "species_taxid": 1261403,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9552,
                "matched_fragments": 262,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mangrovibacterium marinum",
                "strain": "strain=DSM 28823",
                "accession": "GCA_003046625.1",
                "taxid": 1639118,
                "species_taxid": 1639118,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8514,
                "matched_fragments": 283,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mangrovibacterium lignilyticum",
                "strain": "strain=BM_7",
                "accession": "GCA_010882175.1",
                "taxid": 2668052,
                "species_taxid": 2668052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7018,
                "matched_fragments": 261,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sunxiuqinia indica",
                "strain": "strain=RC1_OXG_1F",
                "accession": "GCA_009847015.1",
                "taxid": 2692584,
                "species_taxid": 2692584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.133,
                "matched_fragments": 192,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sunxiuqinia elliptica",
                "strain": "strain=CGMCC 1.9156",
                "accession": "GCA_900113005.1",
                "taxid": 655355,
                "species_taxid": 655355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0907,
                "matched_fragments": 161,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Draconibacterium orientale",
                "strain": "strain=DSM 25947",
                "accession": "GCA_900111425.1",
                "taxid": 1168034,
                "species_taxid": 1168034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5139,
                "matched_fragments": 103,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Maribellus sediminis",
                "strain": "strain=Y2-1-60",
                "accession": "GCA_011799805.1",
                "taxid": 2696285,
                "species_taxid": 2696285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5073,
                "matched_fragments": 104,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Draconibacterium orientale",
                "strain": "strain=FH5",
                "accession": "GCA_000626635.1",
                "taxid": 1168034,
                "species_taxid": 1168034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4932,
                "matched_fragments": 103,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Draconibacterium sediminis",
                "strain": "strain=JN14CK-3",
                "accession": "GCA_000949475.1",
                "taxid": 1544798,
                "species_taxid": 1544798,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3209,
                "matched_fragments": 113,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mariniphaga sediminis",
                "strain": "strain=SY21",
                "accession": "GCA_003573545.1",
                "taxid": 1628158,
                "species_taxid": 1628158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9011,
                "matched_fragments": 74,
                "total_fragments": 1592,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001270965.1",
                "gtdb_species": "s__Sunxiuqinia dokdonensis",
                "ani": 78.3083,
                "matched_fragments": 366,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Sunxiuqinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003610535.1",
                "gtdb_species": "s__Mangrovibacterium diazotrophicum",
                "ani": 77.9426,
                "matched_fragments": 263,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Mangrovibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003046625.1",
                "gtdb_species": "s__Mangrovibacterium marinum",
                "ani": 77.8514,
                "matched_fragments": 283,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Mangrovibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010882175.1",
                "gtdb_species": "s__Mangrovibacterium sp010882175",
                "ani": 77.6894,
                "matched_fragments": 262,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Mangrovibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003246935.1",
                "gtdb_species": "s__Mangrovibacterium sp003246935",
                "ani": 77.4751,
                "matched_fragments": 158,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Mangrovibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113005.1",
                "gtdb_species": "s__Sunxiuqinia elliptica",
                "ani": 77.0907,
                "matched_fragments": 161,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Sunxiuqinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.76",
                "min_intra_species_ani": "95.76",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002429385.1",
                "gtdb_species": "s__UBA6024 sp002429385",
                "ani": 76.6307,
                "matched_fragments": 68,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__UBA6024",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903865775.1",
                "gtdb_species": "s__UBA6024 sp903865775",
                "ani": 76.6292,
                "matched_fragments": 73,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__UBA6024",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003506435.1",
                "gtdb_species": "s__GWE2-42-39 sp003506435",
                "ani": 76.5563,
                "matched_fragments": 158,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__GWE2-42-39",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_011799805.1",
                "gtdb_species": "s__Draconibacterium sp011799805",
                "ani": 76.5046,
                "matched_fragments": 103,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.71",
                "min_intra_species_ani": "96.71",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013824715.1",
                "gtdb_species": "s__UBA6024 sp013824715",
                "ani": 76.4039,
                "matched_fragments": 114,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__UBA6024",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000949475.1",
                "gtdb_species": "s__Draconibacterium sediminis",
                "ani": 76.3167,
                "matched_fragments": 112,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016788685.1",
                "gtdb_species": "s__UBA6024 sp016788685",
                "ani": 76.2445,
                "matched_fragments": 103,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__UBA6024",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003573545.1",
                "gtdb_species": "s__Mariniphaga sediminis",
                "ani": 75.8646,
                "matched_fragments": 73,
                "total_fragments": 1592,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Mariniphaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Gaoshiqia",
        "sediminis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}