{ "type": "genome", "identifier": "GCF_025909975.1", "organism": "Flavobacterium lacisediminis", "title": "Flavobacterium lacisediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Henan University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025909975.1", "bioproject": "PRJNA224116", "biosample": "SAMN31421596", "wgs_master": "JAPCIO000000000.1", "refseq_category": "reference genome", "taxid": "2989705", "species_taxid": "2989705", "organism_name": "Flavobacterium lacisediminis", "infraspecific_name": "strain=TH16-21", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/30", "asm_name": "ASM2590997v1", "asm_submitter": "Henan University of Technology", "gbrs_paired_asm": "GCA_025909975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/909/975/GCF_025909975.1_ASM2590997v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2855988", "genome_size_ungapped": "2855760", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025909975.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "2712", "protein_coding_gene_count": "2633", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-30", "dateModified": "2022-10-30", "datePublished": "2022-10-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium lacisediminis" ], "sample_taxid": [ "2989705" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Taihu Lake, Wuxi, Jiangsu Province" ], "sample_host_location_id": [], "data_size": "0.789 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2855988", "Number of Sequences": "36", "Longest Sequences (bp)": "548071", "N50 (bp)": "391933", "Gap Ratio (%)": "0.008648", "GCcontent (%)": "32.2", "Number of CDSs": "2623", "Average Protein Length": "330.4", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium cheniae", "strain": "strain=CGMCC 1.6844", "accession": "GCA_007830415.1", "taxid": 295428, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015223105.1", "gtdb_species": "s__Flavobacterium aquaticum_A", "ani": 88.7363, "matched_fragments": 772, "total_fragments": 937, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000686885.1", "gtdb_species": "s__Flavobacterium sasangense", "ani": 88.5071, "matched_fragments": 744, "total_fragments": 937, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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