{ "type": "genome", "identifier": "GCF_025950085.1", "organism": "Luteolibacter flavescens", "title": "Luteolibacter flavescens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Forestry University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025950085.1", "bioproject": "PRJNA224116", "biosample": "SAMN31422228", "wgs_master": "JAPDDS000000000.1", "refseq_category": "reference genome", "taxid": "1859460", "species_taxid": "1859460", "organism_name": "Luteolibacter flavescens", "infraspecific_name": "strain=MCCC 1K03193", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/01", "asm_name": "ASM2595008v1", "asm_submitter": "Beijing Forestry University", "gbrs_paired_asm": "GCA_025950085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/950/085/GCF_025950085.1_ASM2595008v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5910676", "genome_size_ungapped": "5910676", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025950085.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4880", "protein_coding_gene_count": "4808", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-01", "dateModified": "2022-11-01", "datePublished": "2022-11-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteolibacter flavescens" ], "sample_taxid": [ "1859460" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Haloferula luteola", "strain": "strain=YC6886", "accession": "GCA_014201715.1", "taxid": 595692, "species_taxid": 595692, "relation_to_type": "type", "validated": true, "ani": 77.2874, "matched_fragments": 158, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=JCM 18804", "accession": "GCA_001313125.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.4523, "matched_fragments": 103, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.4477, "matched_fragments": 110, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriroseicoccus 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"GCA_001683795.1", "taxid": 1679444, "species_taxid": 1679444, "relation_to_type": "type", "validated": true, "ani": 75.8736, "matched_fragments": 76, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter algicola", "strain": "strain=CrO1", "accession": "GCA_016641735.1", "taxid": 2795217, "species_taxid": 2795217, "relation_to_type": "type", "validated": true, "ani": 75.0617, "matched_fragments": 67, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000739615.1", "gtdb_species": "s__Haloferula sp000739615", "ani": 79.6565, "matched_fragments": 818, "total_fragments": 1936, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Haloferula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014904755.1", "gtdb_species": "s__Haloferula sp014904755", "ani": 79.1938, "matched_fragments": 745, "total_fragments": 1936, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Haloferula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018137965.1", "gtdb_species": "s__Luteolibacter sp018137965", "ani": 78.5754, "matched_fragments": 468, "total_fragments": 1936, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007126655.1", "gtdb_species": "s__Luteolibacter sp007126655", "ani": 77.433, "matched_fragments": 196, "total_fragments": 1936, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.62", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016595525.1", "gtdb_species": "s__Haloferula rosea", "ani": 77.342, "matched_fragments": 266, "total_fragments": 1936, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Haloferula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.199, "cell_length": 0.156, "doubling_h": null, "growth_tmp": 28.5, "optimum_tmp": 27.75, "optimum_ph": 7.0, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Luteolibacter", "flavescens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }