{ "type": "genome", "identifier": "GCF_025950095.1", "organism": "Luteolibacter rhizosphaerae", "title": "Luteolibacter rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Forestry University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025950095.1", "bioproject": "PRJNA224116", "biosample": "SAMN31418957", "wgs_master": "JAPDDR000000000.1", "refseq_category": "reference genome", "taxid": "2989719", "species_taxid": "2989719", "organism_name": "Luteolibacter rhizosphaerae", "infraspecific_name": "strain=GHJ8", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/01", "asm_name": "ASM2595009v1", "asm_submitter": "Beijing Forestry University", "gbrs_paired_asm": "GCA_025950095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/950/095/GCF_025950095.1_ASM2595009v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6233507", "genome_size_ungapped": "6233311", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025950095.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "5283", "protein_coding_gene_count": "5198", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-01", "dateModified": "2022-11-01", "datePublished": "2022-11-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteolibacter rhizosphaerae" ], "sample_taxid": [ "2989719" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Haloferula rosea", "strain": "strain=KCTC 22201", "accession": "GCA_016595525.1", "taxid": 490093, "species_taxid": 490093, "relation_to_type": "type", "validated": true, "ani": 77.1066, "matched_fragments": 247, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriroseicoccus oceanibius", "strain": "strain=T37", "accession": "GCA_010681825.2", "taxid": 2707525, "species_taxid": 2707525, "relation_to_type": "type", "validated": true, "ani": 76.6216, "matched_fragments": 69, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimicrobium gellanilyticum", "strain": "strain=DSM 25532", "accession": "GCA_003315205.1", "taxid": 748857, "species_taxid": 748857, "relation_to_type": "type", "validated": true, "ani": 76.3042, "matched_fragments": 114, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevifollis gellanilyticus", "strain": "strain=NBRC 108608", "accession": "GCA_007992435.1", "taxid": 748831, "species_taxid": 748831, "relation_to_type": "type", "validated": true, "ani": 75.9877, "matched_fragments": 124, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000739615.1", "gtdb_species": "s__Haloferula sp000739615", "ani": 80.2311, "matched_fragments": 1075, "total_fragments": 2061, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Haloferula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012913485.1", "gtdb_species": "s__Haloferula lutea", "ani": 79.9042, 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"d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.65", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.199, "cell_length": 0.156, "doubling_h": null, "growth_tmp": 28.5, "optimum_tmp": 27.75, "optimum_ph": 7.0, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Luteolibacter", "rhizosphaerae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }