{ "type": "genome", "identifier": "GCF_025960925.1", "organism": "Actinoplanes cyaneus", "title": "Actinoplanes cyaneus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025960925.1", "bioproject": "PRJNA224116", "biosample": "SAMN06264363", "wgs_master": "JAODUN000000000.1", "refseq_category": "na", "taxid": "52696", "species_taxid": "52696", "organism_name": "Actinoplanes cyaneus", "infraspecific_name": "strain=DSM 46137", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/02", "asm_name": "ASM2596092v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_025960925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/960/925/GCF_025960925.1_ASM2596092v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10415660", "genome_size_ungapped": "10415372", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "93", "contig_count": "93", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025960925.1-RS_2024_08_04", "annotation_date": "2024-08-04", "total_gene_count": "9286", "protein_coding_gene_count": "9061", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-02", "dateModified": "2022-11-02", "datePublished": "2022-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes cyaneus" ], "sample_taxid": [ "52696" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.793 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10415660", "Number of Sequences": "93", "Longest Sequences (bp)": "863785", "N50 (bp)": "372134", "Gap Ratio (%)": "0.002765", "GCcontent (%)": "71.0", "Number of CDSs": "9269", "Average Protein Length": "328.7", "Coding Ratio (%)": "87.8", "Number of rRNAs": "5", "Number of tRNAs": "95", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes cyaneus", "strain": "strain=NBRC 14990", "accession": "GCA_016862095.1", "taxid": 52696, "species_taxid": 52696, "relation_to_type": "type", "validated": true, "ani": 99.979, "matched_fragments": 3340, "total_fragments": 3429, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes ianthinogenes", "strain": "strain=NBRC 13996", "accession": "GCA_018324205.1", "taxid": 122358, "species_taxid": 122358, "relation_to_type": "type", "validated": true, "ani": 85.3525, "matched_fragments": 2186, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ianthinogenes", "strain": "strain=JCM 3249", "accession": "GCA_014648375.1", "taxid": 122358, "species_taxid": 122358, "relation_to_type": "type", "validated": true, "ani": 85.3431, "matched_fragments": 2212, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=DSM 45809", "accession": "GCA_014205225.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 85.3104, "matched_fragments": 2250, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=NBRC 14524", "accession": "GCA_016862295.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 85.2508, "matched_fragments": 2172, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes regularis", "strain": "strain=DSM 43151", "accession": "GCA_900188005.1", "taxid": 52697, "species_taxid": 52697, "relation_to_type": "type", "validated": true, "ani": 85.1066, "matched_fragments": 2138, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=NBRC 13999", "accession": "GCA_016862415.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 84.8735, "matched_fragments": 1901, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=DSM 43866", "accession": "GCA_007829915.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 84.8438, "matched_fragments": 1952, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=ATCC 31121", "accession": "GCA_003711105.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 84.8143, "matched_fragments": 1964, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 82.0279, "matched_fragments": 1802, "total_fragments": 3429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 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