{ "type": "genome", "identifier": "GCF_025961475.1", "organism": "Rhodobium gokarnense", "title": "Rhodobium gokarnense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025961475.1", "bioproject": "PRJNA224116", "biosample": "SAMN28058241", "wgs_master": "JAOQNS000000000.1", "refseq_category": "reference genome", "taxid": "364296", "species_taxid": "364296", "organism_name": "Rhodobium gokarnense", "infraspecific_name": "strain=DSM 17935", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/02", "asm_name": "ASM2596147v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_025961475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/961/475/GCF_025961475.1_ASM2596147v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5096651", "genome_size_ungapped": "5096651", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025961475.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "4632", "protein_coding_gene_count": "4542", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-02", "dateModified": "2022-11-02", "datePublished": "2022-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodobium gokarnense" ], "sample_taxid": [ "364296" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ 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"Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 78.1356, "matched_fragments": 530, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 78.0807, "matched_fragments": 442, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 78.0702, "matched_fragments": 490, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas manganoxydans", "strain": 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209897, "species_taxid": 209897, "relation_to_type": "type", "validated": true, "ani": 77.9645, "matched_fragments": 436, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 77.8851, "matched_fragments": 379, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propylenella binzhouense", "strain": "strain=L72", "accession": "GCA_009866965.1", "taxid": 2555902, "species_taxid": 2555902, "relation_to_type": "type", "validated": true, "ani": 77.84, "matched_fragments": 367, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bauldia litoralis", "strain": "strain=ATCC 35022", "accession": "GCA_900104485.1", "taxid": 665467, "species_taxid": 665467, "relation_to_type": 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319, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium tropiciagri", "strain": "strain=SEMIA 6148", "accession": "GCA_001189845.1", "taxid": 312253, "species_taxid": 312253, "relation_to_type": "type", "validated": true, "ani": 77.0748, "matched_fragments": 399, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 76.9555, "matched_fragments": 226, "total_fragments": 1686, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 76.6997, "matched_fragments": 264, "total_fragments": 1686, "ani_threshold": 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