{ "type": "genome", "identifier": "GCF_025994355.1", "organism": "Gluconacetobacter azotocaptans DSM 13594", "title": "Gluconacetobacter azotocaptans DSM 13594", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tokyo University of Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025994355.1", "bioproject": "PRJNA224116", "biosample": "SAMD00036707", "wgs_master": "BAQG00000000.1", "refseq_category": "na", "taxid": "1307932", "species_taxid": "142834", "organism_name": "Gluconacetobacter azotocaptans DSM 13594", "infraspecific_name": "strain=DSM 13594", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/03", "asm_name": "ASM2599435v1", "asm_submitter": "Tokyo University of Agriculture", "gbrs_paired_asm": "GCA_025994355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/994/355/GCF_025994355.1_ASM2599435v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4139057", "genome_size_ungapped": "4139057", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "365", "contig_count": "365", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025994355.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3998", "protein_coding_gene_count": "3797", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-03", "dateModified": "2022-08-03", "datePublished": "2022-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Gluconacetobacter azotocaptans DSM 13594" ], "sample_taxid": [ "1307932" ], "sample_host_organism": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.5202, "matched_fragments": 188, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014174355.1", "gtdb_species": "s__Gluconacetobacter azotocaptans", "ani": 99.9968, "matched_fragments": 1251, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.32", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { 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