{
    "type": "genome",
    "identifier": "GCF_025994375.1",
    "organism": "Komagataeibacter europaeus LMG 18890",
    "title": "Komagataeibacter europaeus LMG 18890",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tokyo University of Agriculture",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_025994375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00036708",
        "wgs_master": "BAQH00000000.1",
        "refseq_category": "na",
        "taxid": "940283",
        "species_taxid": "33995",
        "organism_name": "Komagataeibacter europaeus LMG 18890",
        "infraspecific_name": "strain=LMG 18890",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/03",
        "asm_name": "ASM2599437v1",
        "asm_submitter": "Tokyo University of Agriculture",
        "gbrs_paired_asm": "GCA_025994375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/994/375/GCF_025994375.1_ASM2599437v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3963914",
        "genome_size_ungapped": "3963914",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "702",
        "contig_count": "702",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_025994375.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "4003",
        "protein_coding_gene_count": "3719",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-03",
    "dateModified": "2022-08-03",
    "datePublished": "2022-08-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Komagataeibacter europaeus LMG 18890"
        ],
        "sample_taxid": [
            "940283"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.114 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3940124",
        "Number of Sequences": "532",
        "Longest Sequences (bp)": "197997",
        "N50 (bp)": "29352",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.5",
        "Number of CDSs": "3562",
        "Average Protein Length": "298.1",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Komagataeibacter europaeus",
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                "accession": "GCA_000285295.1",
                "taxid": 33995,
                "species_taxid": 33995,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 1106,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Komagataeibacter swingsii",
                "strain": "strain=LMG 22125",
                "accession": "GCA_003207895.1",
                "taxid": 215220,
                "species_taxid": 215220,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0594,
                "matched_fragments": 901,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Komagataeibacter diospyri",
                "strain": "strain=MSKU 9",
                "accession": "GCA_006538165.1",
                "taxid": 1932662,
                "species_taxid": 1932662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9892,
                "matched_fragments": 903,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Komagataeibacter oboediens",
                "strain": "strain=LMG 18849",
                "accession": "GCA_003207815.1",
                "taxid": 65958,
                "species_taxid": 65958,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8548,
                "matched_fragments": 839,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Komagataeibacter intermedius",
                "strain": "strain=TF2",
                "accession": "GCA_000964425.1",
                "taxid": 66229,
                "species_taxid": 66229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5566,
                "matched_fragments": 811,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gluconobacter aidae",
                "strain": "strain=AC10",
                "accession": "GCA_009547075.1",
                "taxid": 2662454,
                "species_taxid": 2662454,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8771,
                "matched_fragments": 163,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asaia lannensis",
                "strain": "strain=NBRC 102526",
                "accession": "GCA_024054035.1",
                "taxid": 415421,
                "species_taxid": 415421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7183,
                "matched_fragments": 142,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidiphilium iwatense",
                "strain": "strain=KCTC 23505",
                "accession": "GCA_021556475.1",
                "taxid": 768198,
                "species_taxid": 768198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4069,
                "matched_fragments": 92,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000285295.1",
                "gtdb_species": "s__Komagataeibacter europaeus",
                "ani": 99.9876,
                "matched_fragments": 1105,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_015155755.1",
                "gtdb_species": "s__Komagataeibacter sp015155755",
                "ani": 93.4933,
                "matched_fragments": 864,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003207895.1",
                "gtdb_species": "s__Komagataeibacter swingsii",
                "ani": 92.0399,
                "matched_fragments": 902,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.10",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_006538165.1",
                "gtdb_species": "s__Komagataeibacter diospyri",
                "ani": 90.9754,
                "matched_fragments": 904,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "98.62",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003207815.1",
                "gtdb_species": "s__Komagataeibacter oboediens",
                "ani": 89.8548,
                "matched_fragments": 839,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_000964425.1",
                "gtdb_species": "s__Komagataeibacter intermedius",
                "ani": 89.5477,
                "matched_fragments": 812,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 31.75,
        "optimum_ph": 5.9,
        "genome_size": 3959051.286,
        "gc_content": 61.709,
        "coding_genes": 3380.0,
        "rRNA16S_genes": 4.5,
        "tRNA_genes": 57.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Komagataeibacter",
        "europaeus",
        "LMG",
        "18890"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}