{ "type": "genome", "identifier": "GCF_025994515.1", "organism": "Komagataeibacter rhaeticus DSM 16663", "title": "Komagataeibacter rhaeticus DSM 16663", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tokyo University of Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_025994515.1", "bioproject": "PRJNA224116", "biosample": "SAMD00036715", "wgs_master": "BAQO00000000.1", "refseq_category": "na", "taxid": "1307939", "species_taxid": "215221", "organism_name": "Komagataeibacter rhaeticus DSM 16663", "infraspecific_name": "strain=DSM 16663", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/03", "asm_name": "ASM2599451v1", "asm_submitter": "Tokyo University of Agriculture", "gbrs_paired_asm": "GCA_025994515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/994/515/GCF_025994515.1_ASM2599451v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3446248", "genome_size_ungapped": "3446248", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "172", "contig_count": "172", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_025994515.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3223", "protein_coding_gene_count": "3093", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-03", "dateModified": "2022-08-03", "datePublished": "2022-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Komagataeibacter rhaeticus DSM 16663" ], "sample_taxid": [ "1307939" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.958 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3443216", "Number of Sequences": "149", "Longest Sequences (bp)": "200869", "N50 (bp)": "70600", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "3028", "Average Protein Length": "323.9", "Coding Ratio (%)": "85.4", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Komagataeibacter rhaeticus", "strain": "strain=LMG 22126", "accession": "GCA_003207855.1", "taxid": 215221, "species_taxid": 215221, "relation_to_type": 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"ani": 85.6809, "matched_fragments": 765, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter xylinus", "strain": "strain=NBRC 15237", "accession": "GCA_001571345.1", "taxid": 28448, "species_taxid": 28448, "relation_to_type": "suspected-type", "validated": true, "ani": 85.4884, "matched_fragments": 756, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter sucrofermentans", "strain": "strain=LMG 18788", "accession": "GCA_003207865.1", "taxid": 1053551, "species_taxid": 1053551, "relation_to_type": "type", "validated": true, "ani": 85.3103, "matched_fragments": 758, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter oboediens", "strain": "strain=LMG 18849", "accession": "GCA_003207815.1", "taxid": 65958, "species_taxid": 65958, "relation_to_type": "type", "validated": true, "ani": 85.2425, "matched_fragments": 768, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter nataicola", "strain": "strain=LMG 1536", "accession": "GCA_003207795.1", "taxid": 265960, "species_taxid": 265960, "relation_to_type": "type", "validated": true, "ani": 85.2053, "matched_fragments": 759, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter intermedius", "strain": "strain=TF2", "accession": "GCA_000964425.1", "taxid": 66229, "species_taxid": 66229, "relation_to_type": "type", "validated": true, "ani": 85.0782, "matched_fragments": 777, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter diospyri", "strain": "strain=MSKU 9", "accession": "GCA_006538165.1", "taxid": 1932662, "species_taxid": 1932662, "relation_to_type": "type", "validated": true, "ani": 84.8088, "matched_fragments": 773, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter kakiaceti", "strain": "strain=JCM 25156", "accession": "GCA_000613305.1", "taxid": 943261, "species_taxid": 943261, "relation_to_type": "type", "validated": true, "ani": 84.5097, "matched_fragments": 345, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter saccharivorans", "strain": "strain=LMG 1582", "accession": "GCA_003207825.1", "taxid": 265959, "species_taxid": 265959, "relation_to_type": "type", "validated": true, "ani": 84.1613, "matched_fragments": 682, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 79.0285, "matched_fragments": 360, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.2655, "matched_fragments": 117, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea alexandrii", "strain": "strain=DSM 16655", "accession": "GCA_024105735.1", "taxid": 288436, "species_taxid": 288436, "relation_to_type": "type", "validated": true, "ani": 76.0437, "matched_fragments": 55, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 75.8619, "matched_fragments": 61, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium 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